generate_input.sh no longer expands symbolic links.

See merge request !23

Some computing facilities store data that can be
accessed through symbolic links. This becomes an
issue if generate_input.sh is used to create the
input file for the pipeline, which expands these
links before writing the paths to file. The data
paths in this file would then be in disagreement
with the symbolic link paths used to mount data.
The script no longer expands any symbolic links.

Delay calibrator catalogue is now a pipeline input parameter.

See merge request !22

Debug delay solve

Closes RAP-362

See merge request !20

Add step for application of DDF solutions to flagged Measurement Sets

See merge request !19

Cleaned up pipeline steps.

See merge request !18

Debugged the pipeline after running unreduced data.

See merge request !17

The changes include:
* Core allocation of computationally heavy steps
* Added RFI strategies, since these may not exist within the container image
* Updated python scripts to reflect changes in the generic pipeline implementation

Corrected handling of intermediate output.

See merge request !16

Add workflow for the collection of summary statistics to the pipeline

See merge request !14

Patched msin input to sort-concatenate-flag.

See merge request !15

The input source still pointed to the clip-A-team
workflow, which has been merged with workflows/setup.cwl.

Merged A-team clipping with setup workflow.

See merge request !13

Added `dp3_apply_delay.cwl`.

See merge request !11

Added the copyST_gains step.

See merge request !10

Added step to generate delay calibration solution files

See merge request !9

This step takes an h5 solution file and applies it to the given
measurement set. In practice, the solution file contains the
gain solutions of `steps/copyST_gains.cwl`, while the measurement
set is the concatenated output of the step `phaseup_concatenate`
in `workflows/phaseup-concat.cwl`.

This step takes a solution file generated by `delay_solve` and
transforms circular to linear polarization. In addition, it
adds the ST001 solutions for the core stations to the solution
file.

Incorporate delay_cal_model into the phaseup_concat pipeline

See merge request !6

Added steps for phase shifting to delay calibrator.

See merge request !4

Restructured the sorting and concatenating of subbands.

See merge request !5

Aoflagging

See merge request !3