Resolve L2SS-334 "2021 10 21 replace streams with logger"

Closes L2SS-334

Replaced all streams with logger

Added logger = logging.getlogger() and self.stream.warning_stream("message") -> logger.warning("message") etc.

jupyter-notebooks/.ipynb_checkpoints/test_device-checkpoint.ipynb

+%% Cell type:code id:waiting-chance tags:
+``` python
+import time
+import numpy
+%% Cell type:code id:moving-alexandria tags:
+``` python
+d=DeviceProxy("LTS/XST/1")
+%% Output
+    ---------------------------------------------------------------------------
+    DevFailed                                 Traceback (most recent call last)
+    /tmp/ipykernel_22/3496973635.py in <module>
+    ----> 1 d=DeviceProxy("LTS/XST/1")
+
+    /usr/local/lib/python3.7/dist-packages/tango/device_proxy.py in __DeviceProxy__init__(self, *args, **kwargs)
+        205     self._executors[GreenMode.Gevent] = kwargs.pop('threadpool', None)
+        206     self._executors[GreenMode.Asyncio] = kwargs.pop('asyncio_executor', None)
+    --> 207     return DeviceProxy.__init_orig__(self, *args, **kwargs)
+        208
+        209
+    DevFailed: DevFailed[
+DevError[
+    desc = device lts/xst/1 not defined in the database !
+  origin = DataBase::ImportDevice()
+  reason = DB_DeviceNotDefined
+severity = ERR]
+
+DevError[
+    desc = Failed to execute command_inout on device sys/database/2, command DbImportDevice
+  origin = Connection::command_inout()
+  reason = API_CommandFailed
+severity = ERR]
+
+DevError[
+    desc = Can't connect to device lts/xst/1
+  origin = DeviceProxy::DeviceProxy
+  reason = API_DeviceNotDefined
+severity = ERR]
+]
+%% Cell type:code id:ranking-aluminum tags:
+``` python
+state = str(d.state())
+
+if state == "OFF":
+    d.initialise()
+    time.sleep(1)
+state = str(d.state())
+if state == "STANDBY":
+    d.on()
+state = str(d.state())
+if state == "ON":
+    print("Device is now in on state")
+%% Output
+    ---------------------------------------------------------------------------
+    NameError                                 Traceback (most recent call last)
+    /tmp/ipykernel_22/3213548382.py in <module>
+    ----> 1 state = str(d.state())
+          2
+          3 if state == "OFF":
+          4     d.initialise()
+          5     time.sleep(1)
+    NameError: name 'd' is not defined
+%% Cell type:code id:beneficial-evidence tags:
+``` python
+attr_names = d.get_attribute_list()
+
+for i in attr_names:
+    exec("value = print(i, d.{})".format(i))
+%% Output
+    packet_count_R [55]
+    last_packet_timestamp_R [1623249385]
+    queue_percentage_used_R [0.]
+    State <function __get_command_func.<locals>.f at 0x7fcb205fd0d0>
+    Status <function __get_command_func.<locals>.f at 0x7fcb205fd0d0>
+%% Cell type:code id:sporting-current tags:
+``` python
+d.RCU_mask_RW = [False, False, False, False, False, False, False, False, False, False, False, False,
+ False, False, False, False, False, False, False, False, False, False, False, False,
+ False, False, False, False, False, False, False, False,]
+time.sleep(1)
+print(d.RCU_mask_RW)
+
+monitor_rate = d.RCU_monitor_rate_RW
+print("current monitoring rate: {}, setting to {}".format(monitor_rate, monitor_rate + 1))
+monitor_rate = monitor_rate + 1
+
+time.sleep(1)
+%% Output
+    3.0
+%% Cell type:code id:sharing-mechanics tags:
+``` python
+%% Cell type:code id:ruled-tracy tags:
+``` python