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Commit 033061bb authored by Timo Millenaar's avatar Timo Millenaar
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Merge branch 'scatter_and_aggregate' into 'master'

Remove --exclusive flag from toil slurm arguments to prevent long wait times in slurm queue

See merge request !17
parents bf043449 33212664
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1 merge request!17Remove --exclusive flag from toil slurm arguments to prevent long wait times in slurm queue
Pipeline #95463 passed
......@@ -13,5 +13,5 @@ else
pip install toil[cwl] singularity
fi
export SINGULARITY_BIND="/project:/project"
export TOIL_SLURM_ARGS="--exclusive"
export TOIL_SLURM_ARGS=""
toil-cwl-runner "${SCRIPT_DIR}/imaging_compress_pipeline.git/aggregate_and_plot.cwl" --workdir $SCRIPT_DIR --logDebug --singularity --batchSystem slurm --batchLogsDir ./logs --jobStore ./job_store
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