diff --git a/aggregate_and_plot.sh b/aggregate_and_plot.sh index 56a361679c91a5714e96bc7ef343df5126563105..63ae9d4149a8801e4b59fb6ececd5a492f00198f 100644 --- a/aggregate_and_plot.sh +++ b/aggregate_and_plot.sh @@ -13,5 +13,5 @@ else pip install toil[cwl] singularity fi export SINGULARITY_BIND="/project:/project" -export TOIL_SLURM_ARGS="--exclusive" +export TOIL_SLURM_ARGS="" toil-cwl-runner "${SCRIPT_DIR}/imaging_compress_pipeline.git/aggregate_and_plot.cwl" --workdir $SCRIPT_DIR --logDebug --singularity --batchSystem slurm --batchLogsDir ./logs --jobStore ./job_store