Adress review comments

{{cookiecutter.project_slug}}/.pre-commit-config.yaml

+# https://pre-commit.com/
 default_stages: [ pre-commit, pre-push ]
 default_language_version:
   python: python3

{{cookiecutter.project_slug}}/CMakeLists.txt

@@ -6,9 +6,6 @@ set(
     "${CMAKE_CURRENT_SOURCE_DIR}/cmake/cmake-extra-utils/cmake"
 )
 
-set(LARGEFILE_SOURCE)
-set(FILE_OFFSET_BITS 64)
-
 # Include script
 include(DynamicVersion)
 dynamic_version(

{{cookiecutter.project_slug}}/docker/ci-runner/Dockerfile

 FROM python:3.13
 
-RUN python -m pip install --upgrade cibuildwheel==2.23.0 pip tox twine
+RUN python -m pip install --upgrade pip
+RUN python -m pip install --upgrade cibuildwheel==2.23.0 tox twine
 RUN curl -sSL https://get.docker.com/ | sh

{{cookiecutter.project_slug}}/docker/{{cookiecutter.project_slug}}/Dockerfile

 ARG BUILD_ENV=no_copy
 
+# Build without copying from host inside docker
 FROM python:3.13 AS build_no_copy
 ADD ../../requirements.txt .
 COPY ../.. /work
@@ -8,11 +9,15 @@ RUN python -m pip install --user tox
 WORKDIR /work
 RUN python -m tox -e build
 
+# Copy build package from host `dist` directory
 FROM python:3.13 AS build_copy
 COPY dist /work/dist
 
+# Dynamically set `build` from `build_no_copy` or `build_copy` depending on
+# `BUILD_ENV` argument
 FROM build_${BUILD_ENV} AS build
 
+# Copy build stage files into final python slim image and install
 FROM python:3.13-slim
 COPY --from=build /work/dist /dist
 RUN python -m pip install /dist/*.whl

{{cookiecutter.project_slug}}/docs/cleanup.py

@@ -3,6 +3,10 @@
 #  Copyright (C) 2023 ASTRON (Netherlands Institute for Radio Astronomy)
 #  SPDX-License-Identifier: Apache-2.0
 
+"""
+Remove generated source documentation files except for index.rst
+"""
+
 import os
 
 file_dir = os.path.dirname(os.path.realpath(__file__))

{{cookiecutter.project_slug}}/setup.sh

@@ -5,7 +5,9 @@
 #
 
 # This file's directory is used to determine the station control directory
-# location.
+# location. We substitute BASH_SOURCE if it doesn't get set, this particularly
+# happens when sourcing using the `docker` docker image due to its primitive
+# shell.
 if [ -z ${BASH_SOURCE} ]; then
   BASH_SOURCE=${(%):-%x}
 fi