- Nov 29, 2021
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alex authored
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- Nov 25, 2021
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Andre Offringa authored
Base dockerfile on Ubuntu 20.04 See merge request eosc/prefactor3-cwl!58
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Andre Offringa authored
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Mattia Mancini authored
Add requirements.txt file for creating virtual env for running Prefactor See merge request eosc/prefactor3-cwl!61
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- Nov 22, 2021
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Marcel Loose authored
Remove all references to sevenbridges tags See merge request eosc/prefactor3-cwl!59
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- Nov 19, 2021
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Marcel Loose authored
RabixComposer, which uses the `sevenbridges` namespace and `sbg` tags, cannot handle CWL version 1.2 files. Removed all references to the namespace and tags.
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Marcel Loose authored
Bump CWL Version to v1.2 See merge request eosc/prefactor3-cwl!57
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Marcel Loose authored
CWL v1.2 is more explicit about the way that strings in embedded code that contain a dollar sign ($) must be escaped. See https://www.commonwl.org/v1.2/Workflow.html#String_interpolation. It turned out that a few workflow steps contained inline Bash code with improperly escaped variables references. This has been fixed.
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- Nov 16, 2021
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Marcel Loose authored
Let inline bash scripts exit on error See merge request eosc/prefactor3-cwl!56
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Marcel Loose authored
Most of the inline bash scripts in the CWL files *ignore* errors, which is undesirable. This fix adds a `set -e` to all the inline scripts that did not have one yet. Note that adding a `-e` to the `#!/bin/bash` does *not* work, because the script is not invoked as an executable but as `bash <script-file>`.
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- Nov 15, 2021
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Marcel Loose authored
Give inline scripts sensible names See merge request eosc/prefactor3-cwl!55
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- Nov 11, 2021
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Marcel Loose authored
Some of the inline scripts (bash or python) have names like "script.py", which is not very helpful for debugging. Renamed the scripts for those workflows that contained either script.py or script.sh.
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- Oct 29, 2021
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alex authored
Update soltab name to new one See merge request eosc/prefactor3-cwl!54
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David Rafferty authored
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Marcel Loose authored
Only deploy docs if they were built See merge request eosc/prefactor3-cwl!53
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- Oct 28, 2021
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David Rafferty authored
Move residual step before smooth one See merge request eosc/prefactor3-cwl!52
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David Rafferty authored
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- Oct 26, 2021
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Marcel Loose authored
Improve CI checks See merge request eosc/prefactor3-cwl!51
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David Rafferty authored
Fix typo in true/false check See merge request eosc/prefactor3-cwl!50
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David Rafferty authored
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David Rafferty authored
Fix incorrect installation of CWL files Closes RAP-249 See merge request eosc/prefactor3-cwl!49
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- Oct 25, 2021
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Marcel Loose authored
Many CWL files were being installed in the wrong directory. This has been fixed. This commit fixes RAP-249.
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- Oct 22, 2021
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David Rafferty authored
Fix true/false check See merge request eosc/prefactor3-cwl!48
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David Rafferty authored
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- Oct 20, 2021
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Tammo Jan Dijkema authored
Fix docs path See merge request eosc/prefactor3-cwl!47
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- Oct 19, 2021
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Tammo Jan Dijkema authored
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alex authored
Build docs See merge request eosc/prefactor3-cwl!46
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- Oct 18, 2021
- Oct 15, 2021
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Matthijs van der Wild authored
Corrected typo: control_soltabval.<soltabname>.val now contains the actual control soltab data See merge request eosc/prefactor3-cwl!45
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- Oct 13, 2021
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Matthijs van der Wild authored
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- Oct 08, 2021
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Matthijs van der Wild authored
Changed dashes to underscores, as required by argparse. See merge request eosc/prefactor3-cwl!43
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Matthijs van der Wild authored
Changed dashes to underscores, as required by argparse. See here: https://docs.python.org/dev/library/argparse.html#dest
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- Oct 07, 2021
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Matthijs van der Wild authored
Fix h5parm compare See merge request eosc/prefactor3-cwl!42
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Matthijs van der Wild authored
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Matthijs van der Wild authored
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