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Commit 28cf522a authored by Marcel Loose's avatar Marcel Loose :sunglasses:
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Remove all references to sevenbridges tags

RabixComposer, which uses the `sevenbridges` namespace and `sbg` tags, cannot
handle CWL version 1.2 files. Removed all references to the namespace and tags.
parent fae42eb2
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class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: check_ateam_separation id: check_ateam_separation
baseCommand: baseCommand:
- Ateamclipper.py - Ateamclipper.py
......
...@@ -2,8 +2,6 @@ ...@@ -2,8 +2,6 @@
class: Workflow class: Workflow
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: demix_step_generator id: demix_step_generator
inputs: inputs:
......
...@@ -2,57 +2,37 @@ class: Workflow ...@@ -2,57 +2,37 @@ class: Workflow
cwlVersion: v1.2 cwlVersion: v1.2
id: dp3_execute id: dp3_execute
label: DP3.Execute label: DP3.Execute
$namespaces:
sbg: 'https://www.sevenbridges.com/'
inputs: inputs:
- id: msout_name - id: msout_name
type: string type: string
'sbg:x': -425.39886474609375
'sbg:y': 127
- id: msin - id: msin
type: Directory type: Directory
'sbg:x': -254.39886474609375
'sbg:y': 242
- id: steps - id: steps
type: 'Any[]?' type: 'Any[]?'
'sbg:x': -518.3988647460938
'sbg:y': -88
- id: autoweight - id: autoweight
type: boolean type: boolean
default: true default: true
'sbg:x': -113
'sbg:y': 290
outputs: outputs:
- id: secondary_output_files - id: secondary_output_files
outputSource: outputSource:
- dppp/secondary_output_files - dppp/secondary_output_files
type: Any type: Any
'sbg:x': 213.60113525390625
'sbg:y': -184
- id: secondary_output_directories - id: secondary_output_directories
outputSource: outputSource:
- dppp/secondary_output_directories - dppp/secondary_output_directories
type: Any type: Any
'sbg:x': 248.60113525390625
'sbg:y': -47
- id: msout - id: msout
outputSource: outputSource:
- dppp/msout - dppp/msout
type: Directory type: Directory
'sbg:x': 224.60113525390625
'sbg:y': 130
- id: logfile - id: logfile
outputSource: outputSource:
- dppp/logfile - dppp/logfile
type: 'File[]' type: 'File[]'
'sbg:x': 185.1875
'sbg:y': 334.5
- id: parset - id: parset
outputSource: outputSource:
- generic_step/parset - generic_step/parset
type: File type: File
'sbg:x': 11.1875
'sbg:y': -299.5
steps: steps:
- id: generic_step - id: generic_step
in: in:
...@@ -66,8 +46,6 @@ steps: ...@@ -66,8 +46,6 @@ steps:
- id: output_file_names - id: output_file_names
- id: output_directory_names - id: output_directory_names
run: ./DP3.ParsetGenerator.cwl run: ./DP3.ParsetGenerator.cwl
'sbg:x': -294
'sbg:y': -84
- id: dppp - id: dppp
in: in:
- id: parset - id: parset
...@@ -94,6 +72,4 @@ steps: ...@@ -94,6 +72,4 @@ steps:
- id: secondary_output_directories - id: secondary_output_directories
- id: logfile - id: logfile
run: ./DPPP.cwl run: ./DPPP.cwl
'sbg:x': 26
'sbg:y': -46
requirements: [] requirements: []
...@@ -2,8 +2,6 @@ ...@@ -2,8 +2,6 @@
class: Workflow class: Workflow
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: dp3-filter-step-generator id: dp3-filter-step-generator
inputs: inputs:
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: dppp id: dppp
baseCommand: baseCommand:
- DP3 - DP3
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces: $namespaces:
sbg: 'https://www.sevenbridges.com/'
lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
$schema: $schema:
- https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
......
...@@ -2,7 +2,6 @@ class: CommandLineTool ...@@ -2,7 +2,6 @@ class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces: $namespaces:
lofar: 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl' lofar: 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl'
sbg: 'https://www.sevenbridges.com/'
id: losoto_prefactor_bandpass id: losoto_prefactor_bandpass
baseCommand: baseCommand:
- losoto - losoto
......
...@@ -2,7 +2,6 @@ class: CommandLineTool ...@@ -2,7 +2,6 @@ class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces: $namespaces:
lofar: 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl' lofar: 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl'
sbg: 'https://www.sevenbridges.com/'
id: losoto_prefactor_xyoffset id: losoto_prefactor_xyoffset
baseCommand: baseCommand:
- losoto - losoto
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: applybeam id: applybeam
baseCommand: baseCommand:
- DP3 - DP3
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: applycal id: applycal
baseCommand: baseCommand:
- DP3 - DP3
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: applytarget id: applytarget
baseCommand: baseCommand:
- DP3 - DP3
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: average id: average
baseCommand: baseCommand:
- DP3 - DP3
......
...@@ -2,7 +2,6 @@ class: CommandLineTool ...@@ -2,7 +2,6 @@ class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces: $namespaces:
lofar: 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl' lofar: 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl'
sbg: 'https://www.sevenbridges.com/'
id: calib_rot_diag id: calib_rot_diag
baseCommand: baseCommand:
- DP3 - DP3
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: dpppconcat id: dpppconcat
baseCommand: baseCommand:
- DP3 - DP3
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: predict id: predict
baseCommand: baseCommand:
- DP3 - DP3
......
...@@ -2,7 +2,6 @@ class: CommandLineTool ...@@ -2,7 +2,6 @@ class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces: $namespaces:
lofar: 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl' lofar: 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl'
sbg: 'https://www.sevenbridges.com/'
id: gaincal id: gaincal
baseCommand: baseCommand:
- DP3 - DP3
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: interpolate_visibilities id: interpolate_visibilities
baseCommand: baseCommand:
- DP3 - DP3
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: make_sourcedb id: make_sourcedb
baseCommand: baseCommand:
- makesourcedb - makesourcedb
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: ms_concat id: ms_concat
baseCommand: baseCommand:
- /bin/bash - /bin/bash
......
class: CommandLineTool class: CommandLineTool
cwlVersion: v1.2 cwlVersion: v1.2
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: predict id: predict
baseCommand: baseCommand:
- DP3 - DP3
......
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