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concat.cwl 2.49 KiB
class: Workflow
cwlVersion: v1.0
id: concat
label: concat
$namespaces:
sbg: 'https://www.sevenbridges.com/'
inputs:
- id: msin
type: 'Directory[]'
'sbg:x': -1000
'sbg:y': -300
- id: group_id
type: string
'sbg:x': -1000
'sbg:y': -200
- id: groups_specification
type: File
'sbg:x': -1000
'sbg:y': -100
- id: filter_baselines
type: string
'sbg:x': -1000
'sbg:y': 0
- id: avg_timeresolution_concat
type: int
'sbg:x': -1000
'sbg:y': 100
- id: avg_freqresolution_concat
type: string
'sbg:x': -1000
'sbg:y': 200
- id: min_unflagged_fraction
type: float
'sbg:x': -1000
'sbg:y': 300
outputs:
- id: msout
outputSource:
- dpppconcat/msout
type: Directory
'sbg:x': 1000
'sbg:y': 0
- id: dpppconcat.log
outputSource:
- concat_logfiles_dpppconcat/output
type: File
'sbg:x': 1000
'sbg:y': 100
steps:
- id: filter_ms_group
in:
- id: group_id
source: group_id
- id: groups_specification
source: groups_specification
- id: measurement_sets
source:
- msin
out:
- id: output
- id: selected_ms
run: ../steps/filter_ms_group.cwl
label: filter_ms_group
'sbg:x': -500
'sbg:y': 0
- id: dpppconcat
in:
- id: msin
source:
- msin
- id: msin_fname
source: filter_ms_group/selected_ms
- id: msout_name
source: group_id
- id: msin_datacolumn
default: DATA
- id: msout_datacolumn
default: DATA
- id: filter_baselines
source: filter_baselines
- id: filter_remove
default: true
- id: overwrite
default: false
- id: storagemanager
default: Dysco
- id: databitrate
default: 0
- id: missingdata
default: true
- id: baseline
source: filter_baselines
- id: avg_timeresolution
source: avg_timeresolution_concat
- id: avg_freqresolution
source: avg_freqresolution_concat
out:
- id: msout
- id: logfile
run: ../lofar-cwl/steps/dpppconcat.cwl
label: dpppconcat
'sbg:x': -200
'sbg:y': 0
- id: concat_logfiles_dpppconcat
in:
- id: file_list
source:
- dpppconcat/logfile
- id: file_prefix
default: dpppconcat
out:
- id: output
run: ../steps/concatenate_files.cwl
label: concat_logfiles_dpppconcat
'sbg:x': 600
'sbg:y': 200
requirements: []