The include paths for foo/bar.cpp contained ../../ breaking out of the
source tree. This can pick up files in other directories. This should be
fixed by not using .. in include paths. That's however not the scope of
this patch series.

This ../../ worked due to aocommon's global include path. The next patch
makes aocommon an submodule, which breaks the build due to this
artifact. Hence fix the paths before making aocommon a submodule.

Add 'select zoom' option

See merge request aroffringa/aoflagger!131

Add Docker for libc++ compile + fix errors

See merge request aroffringa/aoflagger!130

Fix clang diagnostics

See merge request aroffringa/aoflagger!129

Fix an API error in one of the Python examples

See merge request aroffringa/aoflagger!128

Avoid crash when plot area hasn't been initialized yet

See merge request aroffringa/aoflagger!127

Use shallow clones for the submodules

See merge request aroffringa/aoflagger!126

Remove unnecessary XML writer

See merge request aroffringa/aoflagger!125

Recognize .sdhdf as an sdhdf file

Closes #30

See merge request aroffringa/aoflagger!124

Fixes #30.

Fix formatting

See merge request aroffringa/aoflagger!123

Fix error in sumthreshold Lua documentation

See merge request aroffringa/aoflagger!122

Link with HDF5_CXX_LIBRARIES and HDF5_C_LIBRARIES

Closes #33

See merge request aroffringa/aoflagger!121

HDF5_LIBRARIES should include both, but this doesn't work for me. This fixes #33.

Apply some suggestions by clang-tidy

See merge request aroffringa/aoflagger!120

Write flags back to SD HDF5 data sets

See merge request aroffringa/aoflagger!119

Add documentation about aoquality

See merge request aroffringa/aoflagger!118

Add the Apertif 2021-03-09 strategy and set it as default

See merge request aroffringa/aoflagger!117

Fix older HDF5-compilation issue

See merge request aroffringa/aoflagger!116

Add HINTS to find FFTW3

See merge request aroffringa/aoflagger!115

Added HINTS to find_library() and find_path() of FFTW3. This is necessary
on systems where FFTW3 is loaded as a module, otherwise CMake might find
the system default, instead of the module version.

Small addition to doc

See merge request aroffringa/aoflagger!114