Update tooling and structure

.gitignore

.gitlab-ci.yml

.pre-commit-config.yaml

MANIFEST.in

NEWSTATION.md

README.md

bin/hooks/pre-commit.sh

debug-requirements.txt

docker/Makefile

docker/ec-sim/ec_sim.py

...ter-lab/default-notebooks/Station State Transitions.ipynb

...files/stationcontrol-jupyter/startup/01-stationcontrol.py

docs/README.md

docs/cleanup.py

docs/requirements.txt

docs/source/broken_hardware.rst

docs/source/calibration.rst

docs/source/conf.py

docs/source/configure_station.rst

docs/source/developer.rst