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rest.yml

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    fix_weightissue_flagging.cwl 1011 B
    id: fix_weight_issue_flagging
    label: Fix Weight Issue Flagging
    cwlVersion: v1.2
    class: CommandLineTool
    baseCommand:
      - bash
      - script.sh
    requirements:
      - class: InitialWorkDirRequirement
        listing:
          - entry: $(inputs.msin)
            writable: true
            entryname: $(inputs.msin.basename)
          - entryname: script.sh
            entry: |
              #!/bin/bash
    
              execute=$(inputs.apply)
              if [ $execute = 'true' ] ; then
                echo "Appling fix weight issue flagging"
                fix_weightspectrum $(inputs.msin.basename)
              fi
              echo "Skipping apply fix weight issue flagging"
      - class: InplaceUpdateRequirement
        inplaceUpdate: true
    inputs:
      - id: msin
        type: Directory
      - id: apply
        type: boolean
    outputs:
      - id: msout
        type: Directory
        outputBinding:
          glob: $(inputs.msin.basename)
    hints:
      - class: DockerRequirement
        dockerPull: git.astron.nl:5000/ldv/imaging_compress_pipeline:v0.5.18
      - class: NetworkAccess
        networkAccess: true