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fix_weightissue_flagging.cwl 1011 B
id: fix_weight_issue_flagging
label: Fix Weight Issue Flagging
cwlVersion: v1.2
class: CommandLineTool
baseCommand:
- bash
- script.sh
requirements:
- class: InitialWorkDirRequirement
listing:
- entry: $(inputs.msin)
writable: true
entryname: $(inputs.msin.basename)
- entryname: script.sh
entry: |
#!/bin/bash
execute=$(inputs.apply)
if [ $execute = 'true' ] ; then
echo "Appling fix weight issue flagging"
fix_weightspectrum $(inputs.msin.basename)
fi
echo "Skipping apply fix weight issue flagging"
- class: InplaceUpdateRequirement
inplaceUpdate: true
inputs:
- id: msin
type: Directory
- id: apply
type: boolean
outputs:
- id: msout
type: Directory
outputBinding:
glob: $(inputs.msin.basename)
hints:
- class: DockerRequirement
dockerPull: git.astron.nl:5000/ldv/imaging_compress_pipeline:v0.5.18
- class: NetworkAccess
networkAccess: true