Update docker image and remove Rabix tags

compress_pipeline.cwl

@@ -2,24 +2,16 @@ class: Workflow
 cwlVersion: v1.0
 id: compress_pipeline_cwl
 label: compress_pipeline.cwl
-$namespaces:
-  sbg: 'https://www.sevenbridges.com/'
 inputs:
   - id: flag_autocorrelation
     type: boolean?
-    'sbg:x': -41
-    'sbg:y': -212
   - id: surls
     type: 'string[]'
-    'sbg:x': -229
-    'sbg:y': -29
 outputs:
   - id: output
     outputSource:
       - inspect_flagging_dataloss/output
     type: File[]
-    'sbg:x': 568.6015625
-    'sbg:y': 213.5
   - id: logfile
     outputSource:
       - dppp/logfile
@@ -28,14 +20,10 @@ outputs:
       items:
         type: array
         items: File
-    'sbg:x': 682.6015625
-    'sbg:y': 48.5
   - id: msout
     outputSource:
       - dppp/msout
     type: Directory[]
-    'sbg:x': 738.6015625
-    'sbg:y': -130.5
 steps:
   - id: surl_copy
     in:
@@ -47,8 +35,6 @@ steps:
     label: surl_copy
     scatter:
       - surl
-    'sbg:x': 14
-    'sbg:y': -28
   - id: untar
     in:
       - id: tar_file
@@ -59,8 +45,6 @@ steps:
     label: untar
     scatter:
       - tar_file
-    'sbg:x': 173
-    'sbg:y': -28
   - id: dppp
     in:
       - id: parset
@@ -69,7 +53,7 @@ steps:
         source: untar/uncompressed
       - id: msout_name
         source: untar/uncompressed
-        valueFrom: $("COMPRESSED_" + self.basename)
+        valueFrom: $("COMPRESSED_" + self)
       - id: writefullresflag
         default: true
       - id: storagemanager
@@ -82,8 +66,6 @@ steps:
     run: steps/DPPP.cwl
     scatter:
       - msin
-    'sbg:x': 471
-    'sbg:y': -75
   - id: define_parset
     in:
       - id: flag_autocorrelation
@@ -92,8 +74,6 @@ steps:
       - id: output
     run: steps/define_parset.cwl
     label: define_parset
-    'sbg:x': 196
-    'sbg:y': -227
   - id: inspect_flagging_dataloss
     in:
       - id: input
@@ -104,8 +84,6 @@ steps:
     label: inspect_flagging_dataloss
     scatter:
       - input
-    'sbg:x': 397
-    'sbg:y': 132
 requirements:
   - class: ScatterFeatureRequirement
   - class: StepInputExpressionRequirement

steps/DPPP.cwl

@@ -86,7 +86,7 @@ outputs:
       glob: 'DPPP*.log'
 hints:
   - class: DockerRequirement
-    dockerPull: lofareosc/prefactor:HBAcalibrator
+    dockerPull: lofareosc/lofar-pipeline:latest
 stdout: DPPP.log
 stderr: DPPP_err.log
 requirements: