Mage aggregate_and_plot.py actually aggreagate .h5 files and plot the contents

aggregate_and_plot.py

+from lofar_quality.manipulate.common import join_inspect_ds
+from lofar_quality.inspect.inspect_dataset import plot_inspect_ds
+from pathlib import Path
+import logging
+
+FORMAT = '%(levelname)-15s %(asctime)s: %(message)s'
+logging.basicConfig(format=FORMAT, level="INFO")
+
+if __name__ == "__main__":
+    h5_paths = []
     with open("inputs.txt", "r") as file:
         for line in file:
-        print(line)
+            line = str(line.strip()) # remove white space
+            path = Path(line)
+            if path.exists():
+                if path.suffix.lower() == ".h5":
+                    h5_paths.append(line)
+                else:
+                    logging.info(f"File exists but is not an h5 file: {line}")
+
+            else:
+                logging.info(f"Could not find the following input file: {line}")
+        logging.info(f"Found {len(h5_paths)} h5 files")
+
+    h5_output_path = "inspect.h5"
+    join_inspect_ds(h5_paths, h5_output_path)
+    plot_inspect_ds(h5_output_path, "./", min_elevation=15)