Add to summary applied fixes

compress_pipeline.cwl

@@ -24,6 +24,11 @@ outputs:
     outputSource:
       - format_ingest/ingest
     type: Any
+  - id: applied_fixes
+    type: string[]
+    outputSource:
+      - identify_issues/issue_list
+    
 steps:
   - id: identify_issues
     run: steps/identify_issues.cwl

download_and_compress_pipeline.cwl

@@ -55,6 +55,7 @@ steps:
       - id: inspect
       - id: logfile
       - id: ingest
+      - id: applied_fixes
     run: ./compress_pipeline.cwl
   - id: combine
     in:
@@ -77,6 +78,8 @@ steps:
       source: extract_metrics/plots
     - id: quality
       source: extract_metrics/quality
+    - id: applied_fixes
+      source: compress/applied_fixes
     run: steps/format_metrics.cwl
     out:
     - formatted_quality

steps/format_metrics.cwl

@@ -22,12 +22,17 @@ expression: |
     observingConditions +=  1 - inputs.quality.elevation_score;
     sensitivityScore += observingConditions;
     
+    
+
     var result = {
               'uv-coverage': uvCoverageScore,
               'sensitivity': sensitivityScore,
               'observing-conditions': observingConditions,
               'plots': inputs.plots,
               'details': inputs.quality
+              'summary': {
+                applied_fixes: inputs.applied_fixes[0]
+              }
     };
     return {'formatted_quality': result}
       
@@ -39,6 +44,12 @@ inputs:
   type: File[]
 - id: quality
   type: Any
+- id: applied_fixes
+  type: 
+    type: array
+    items: 
+      type: array
+      items: string
 outputs:
 - id: formatted_quality
   type: Any