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imaging_compress_pipeline
Commits
002dd148
Commit
002dd148
authored
Apr 1, 2021
by
Mattia Mancini
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compress_pipeline.cwl
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compress_pipeline.cwl
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002dd148
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@@ -2,24 +2,16 @@ class: Workflow
cwlVersion: v1.0
id: compress_pipeline_cwl
label: compress_pipeline.cwl
$namespaces:
sbg: 'https://www.sevenbridges.com/'
inputs:
- id: flag_autocorrelation
type: boolean?
'sbg:x': 0
'sbg:y': 160.5
- id: surls
type: 'string[]'
'sbg:x': 0
'sbg:y': 53.5
outputs:
- id: output
outputSource:
- inspect_flagging_dataloss/output
type: 'File[]'
'sbg:x': 860.3446655273438
'sbg:y': 0
- id: logfile
outputSource:
- dppp/logfile
...
...
@@ -28,14 +20,10 @@ outputs:
items:
items: File
type: array
'sbg:x': 849
'sbg:y': 271
- id: compressed
outputSource:
- compress/compressed
type: Directory
'sbg:x': 1040
'sbg:y': 117
steps:
- id: surl_copy
in:
...
...
@@ -47,8 +35,6 @@ steps:
label: surl_copy
scatter:
- surl
'sbg:x': 206.75
'sbg:y': 53.5
- id: untar
in:
- id: tar_file
...
...
@@ -59,8 +45,6 @@ steps:
label: untar
scatter:
- tar_file
'sbg:x': 436.640625
'sbg:y': 107
- id: dppp
in:
- id: parset
...
...
@@ -82,8 +66,6 @@ steps:
run: steps/DPPP.cwl
scatter:
- msin
'sbg:x': 642.375
'sbg:y': 160.5
- id: define_parset
in:
- id: flag_autocorrelation
...
...
@@ -92,8 +74,6 @@ steps:
- id: output
run: steps/define_parset.cwl
label: define_parset
'sbg:x': 206.75
'sbg:y': 160.5
- id: inspect_flagging_dataloss
in:
- id: input
...
...
@@ -104,8 +84,6 @@ steps:
label: inspect_flagging_dataloss
scatter:
- input
'sbg:x': 642.375
'sbg:y': 39.5
- id: compress
in:
- id: directory
...
...
@@ -116,7 +94,5 @@ steps:
label: compress
scatter:
- directory
'sbg:x': 857
'sbg:y': 117
requirements:
- class: ScatterFeatureRequirement
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