fetch_data.cwl

id: fetchdata
label: fetch_data
class: CommandLineTool
cwlVersion: v1.1
inputs:
  - id: surl_link
    type: string
    inputBinding:
      position: 0

outputs:
  - id: uncompressed
    type: Directory
    outputBinding:
      glob: 'out/*'
baseCommand:
 - 'bash'
 - 'fetch.sh'
doc: 'Untar a compressed file'
requirements:
  InlineJavascriptRequirement: {}
  InitialWorkDirRequirement:
    listing:
      - entryname: 'fetch.sh'
        entry: |
          #!/bin/bash
          mkdir out
          cd out
          echo "--- untar the tar file from the shared directory into the local tmp directory ---"
          echo $1
          echo "---------------------------------------------------------------------------------"
          cat $1 | tar -xvf -
          ls -rtl
          echo "Nico was here!"
          #globus-url-copy $turl - | tar -xvf -