Add steps to pipeline

workflow/averaging_pipeline.cwl

+class: Workflow
+cwlVersion: v1.0
+id: averaging_pipeline
+$namespaces:
+  sbg: 'https://www.sevenbridges.com/'
+inputs:
+  - id: msin
+    type: Directory
+    'sbg:x': -88.39886474609375
+    'sbg:y': 95.5
+  - id: strategy
+    type: File?
+    'sbg:x': -467
+    'sbg:y': -264
+  - id: skymodel
+    'sbg:x': -356.85662841796875
+    'sbg:y': 130.74981689453125
+outputs:
+  - id: msout
+    outputSource:
+      - dp3_execute/msout
+    type: Directory
+    'sbg:x': 384.60113525390625
+    'sbg:y': 155.5
+steps:
+  - id: aoflagger_step_generator
+    in:
+      - id: steps
+        source:
+          - preflag_step_generator/augmented_steps
+      - id: strategy
+        source: strategy
+      - id: memoryperc
+        default: 0
+      - id: timewindow
+        default: 0
+      - id: overlapmax
+        default: 0
+      - id: pedantic
+        default: false
+      - id: keepstatistics
+        default: true
+    out:
+      - id: augmented_steps
+    run: ../lofar-cwl/steps/DP3.AOFlaggerStepGenerator.cwl
+    'sbg:x': -250
+    'sbg:y': -102
+  - id: preflag_step_generator
+    in:
+      - id: steps
+        source:
+          - channel_flagging/augmented_steps
+    out:
+      - id: augmented_steps
+    run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl
+    'sbg:x': -457
+    'sbg:y': -97
+  - id: channel_flagging
+    in:
+      - id: chan
+        default: '[0..nchan/32-1,31*nchan/32..nchan-1]'
+    out:
+      - id: augmented_steps
+    run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl
+    'sbg:x': -620
+    'sbg:y': -98
+  - id: demix_step_generator
+    in:
+      - id: steps
+        source:
+          - aoflagger_step_generator/augmented_steps
+      - id: baseline
+        default: 'CS*,RS*&'
+      - id: corrtype
+        default: cross
+      - id: timestep
+        default: 1
+      - id: freqstep
+        default: 4
+      - id: demixtimestep
+        default: 16
+      - id: demixfreqstep
+        default: 64
+      - id: ntimechunk
+        default: 0
+      - id: skymodel
+        source: skymodel
+      - id: instrumentmodel
+        default: instrument
+    out:
+      - id: augmented_steps
+    run: ../lofar-cwl/steps/DP3.DemixerStepGenerator.cwl
+    'sbg:x': -58
+    'sbg:y': -99
+  - id: dp3_execute
+    in:
+      - id: msin
+        source: msin
+      - id: steps
+        source:
+          - demix_step_generator/augmented_steps
+    out:
+      - id: secondary_output_files
+      - id: secondary_output_directories
+      - id: msout
+    run: ../lofar-cwl/steps/DP3.Execute.cwl
+    label: DP3.Execute
+    'sbg:x': 132
+    'sbg:y': 61
+requirements:
+  - class: SubworkflowFeatureRequirement