diff --git a/workflow/averaging_pipeline.cwl b/workflow/averaging_pipeline.cwl index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..537c154dde5bbb39061a95797436cba4fd1b21ca 100644 --- a/workflow/averaging_pipeline.cwl +++ b/workflow/averaging_pipeline.cwl @@ -0,0 +1,111 @@ +class: Workflow +cwlVersion: v1.0 +id: averaging_pipeline +$namespaces: + sbg: 'https://www.sevenbridges.com/' +inputs: + - id: msin + type: Directory + 'sbg:x': -88.39886474609375 + 'sbg:y': 95.5 + - id: strategy + type: File? + 'sbg:x': -467 + 'sbg:y': -264 + - id: skymodel + 'sbg:x': -356.85662841796875 + 'sbg:y': 130.74981689453125 +outputs: + - id: msout + outputSource: + - dp3_execute/msout + type: Directory + 'sbg:x': 384.60113525390625 + 'sbg:y': 155.5 +steps: + - id: aoflagger_step_generator + in: + - id: steps + source: + - preflag_step_generator/augmented_steps + - id: strategy + source: strategy + - id: memoryperc + default: 0 + - id: timewindow + default: 0 + - id: overlapmax + default: 0 + - id: pedantic + default: false + - id: keepstatistics + default: true + out: + - id: augmented_steps + run: ../lofar-cwl/steps/DP3.AOFlaggerStepGenerator.cwl + 'sbg:x': -250 + 'sbg:y': -102 + - id: preflag_step_generator + in: + - id: steps + source: + - channel_flagging/augmented_steps + out: + - id: augmented_steps + run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl + 'sbg:x': -457 + 'sbg:y': -97 + - id: channel_flagging + in: + - id: chan + default: '[0..nchan/32-1,31*nchan/32..nchan-1]' + out: + - id: augmented_steps + run: ../lofar-cwl/steps/DP3.PreflaggerStepGenerator.cwl + 'sbg:x': -620 + 'sbg:y': -98 + - id: demix_step_generator + in: + - id: steps + source: + - aoflagger_step_generator/augmented_steps + - id: baseline + default: 'CS*,RS*&' + - id: corrtype + default: cross + - id: timestep + default: 1 + - id: freqstep + default: 4 + - id: demixtimestep + default: 16 + - id: demixfreqstep + default: 64 + - id: ntimechunk + default: 0 + - id: skymodel + source: skymodel + - id: instrumentmodel + default: instrument + out: + - id: augmented_steps + run: ../lofar-cwl/steps/DP3.DemixerStepGenerator.cwl + 'sbg:x': -58 + 'sbg:y': -99 + - id: dp3_execute + in: + - id: msin + source: msin + - id: steps + source: + - demix_step_generator/augmented_steps + out: + - id: secondary_output_files + - id: secondary_output_directories + - id: msout + run: ../lofar-cwl/steps/DP3.Execute.cwl + label: DP3.Execute + 'sbg:x': 132 + 'sbg:y': 61 +requirements: + - class: SubworkflowFeatureRequirement