create structure for Validation and Failures pages

atdb/taskdatabase/templates/taskdatabase/base.html

@@ -49,7 +49,6 @@
 
                 {% if user.is_authenticated %}
                     <li><a class="nav-link" href="{% url 'task-details'%}">Task Details</a></li>
-                    <li><a class="nav-link" href="{% url 'quality' %}">Quality</a></li>
                 {% endif %}
 
                 <li><a class="nav-link" href="{% url 'dashboard' 'active_nores_nofilter' %}">Dashboard</a></li>
@@ -58,6 +57,11 @@
 {% comment %}
                 <li><a class="nav-link" href="{% url 'query2' request|current_query_params %}">Filter2</a></li>
 {% endcomment %}
+
+                <li><a class="nav-link" href="{% url 'quality' %}">Quality</a></li>
+                <li><a class="nav-link" href="{% url 'validation' %}">Validation</a></li>
+                <li><a class="nav-link" href="{% url 'failures' %}">Failures</a></li>
+
                 <li><a class="nav-link" href="{% url 'monitoring' %}">Monitoring</a></li>
 
                 <li><a class="nav-link" href="{% url 'diagram' %}">Diagram</a></li>

atdb/taskdatabase/templates/taskdatabase/failures/failures_page.html

+{% extends 'taskdatabase/base.html' %}
+{% load static %}
+
+{% block myBlock %}
+
+<div class="container-fluid details-container">
+      <div class="card">
+       <div class="card-body">
+        <div class="row">
+            <div class="col-8">
+                <h3>Failures</h3>
+                These are all the tasks that failed.
+                Click 'Retry' to restart a specific step in the workflow.
+                <a class="nav-link" href="{% url 'diagram' %}">See workflow diagram</a>
+                <hr>
+            </div>
+        </div>
+        <div class="row">
+        <div class="col-sm-12 col-md-12 col-lg-12">
+            {% include 'taskdatabase/pagination.html' %}
+            &nbsp;
+            {% if my_tasks %}
+            <div class="panel panel-success">
+
+                <div class="panel-body">
+
+                    <table class="table table-striped table-bordered table-sm">
+                        <thead>
+                        {% include 'taskdatabase/failures/tasks_failures_headers.html' %}
+                        </thead>
+                        <tbody>
+                        {% include 'taskdatabase/failures/tasks_failures.html' %}
+                        </tbody>
+                    </table>
+                    {% else %}
+                    <p>No recent Tasks.</p>
+                    {% endif %}
+
+                </div>
+            </div>
+            {% include 'taskdatabase/pagination.html' %}
+           </div>
+        </div>
+       </div>
+      </div>
+</div>
+
+{% include 'taskdatabase/localstorage_scripts.html' %}
+
+
+{% endblock %}
+

atdb/taskdatabase/templates/taskdatabase/index.html

@@ -34,7 +34,7 @@
         {% include 'taskdatabase/pagination.html' %}
        </div>
     </div>
-    <p class="footer"> Version 1.0.0 (8 mar 2021 - 17:00)
+    <p class="footer"> Version 1.0.0 (1 apr 2021 - 08:00)
 
 </div>
 

atdb/taskdatabase/templates/taskdatabase/quality_page.html → atdb/taskdatabase/templates/taskdatabase/quality/quality_page.html

@@ -9,6 +9,8 @@
         <div class="row">
             <div class="col-8">
                 <h3>Quality Diagnostics</h3>
+                This overview shows the Quality Diagnostics of all the task that have this information'.
+                <hr>
             </div>
         </div>
         <div class="row">
@@ -22,10 +24,10 @@
 
                     <table class="table table-striped table-bordered table-sm">
                         <thead>
-                        {% include 'taskdatabase/tasks_quality_headers.html' %}
+                        {% include 'taskdatabase/quality/tasks_quality_headers.html' %}
                         </thead>
                         <tbody>
-                        {% include 'taskdatabase/tasks_quality.html' %}
+                        {% include 'taskdatabase/quality/tasks_quality.html' %}
                         </tbody>
                     </table>
                     {% else %}

atdb/taskdatabase/templates/taskdatabase/quality/tasks_quality.html

+{% load static %}
+{% for task in my_tasks %}
+
+        {% if task.status != "removed_invisible" %}
+        <div class="row">
+            <tr class="{{ task.status }}">
+
+                <td>
+                    <a href="{{ task.get_absolute_url }}" target="_blank">{{ task.id }} </a>
+                </td>
+                <td>
+                    {% if user.is_authenticated %}
+                        <a class="btn btn-primary btn-sm"
+                           href="{% url 'task-details' task.id my_tasks.number %}"
+                           data-popup-url="{% url 'task-details' task.id my_tasks.number %}"
+                           ><i class="fas fa-list"></i> Details
+                        </a>&nbsp;
+                    {% endif %}
+                </td>
+
+                {% if task.resume  %}
+                    <td class="bigger">{{ task.status }}</td>
+                {% endif %}
+                {% if not task.resume  %}
+                    <td class="bigger">{{ task.status }} (holding)</td>
+                {% endif %}
+
+                <td>{{ task.project }}</td>
+                <td>{{ task.sas_id }}</td>
+
+                <td>{{ task.filter }} </td>
+
+                {% if task.has_quality %}
+                {% for value in task.quality_as_list %}
+                    <td>{{value}}</td>
+                 {% endfor %}
+                {% endif %}
+
+
+                <td>
+
+                </tr>
+            </div>
+        {% endif %}
+
+{% endfor %}
+
+{% include "taskdatabase/modal/modal_script.html" %}
+{% include "taskdatabase/modal/modal.html" %}
\ No newline at end of file

atdb/taskdatabase/templates/taskdatabase/quality/tasks_quality_headers.html

+<tr>
+    <th>ID</th>
+    <th>Details</th>
+
+    <th>Status</th>
+    <th>Project</th>
+    <th>SAS_ID</th>
+    <th>filter</th>
+    <th>uv-coverage</th>
+    <th>Sensitivity</th>
+    <th>Conditions</th>
+    <th>Diagnostic plots</th>
+    <th>Summary parset</th>
+    <th>Summary logs</th>
+    <th>Summary hf5</th>
+</tr>
\ No newline at end of file

atdb/taskdatabase/templates/taskdatabase/validation/tasks_validation.html

+{% load static %}
+{% for task in my_tasks %}
+
+        {% if task.status != "removed_invisible" %}
+        <div class="row">
+            <tr class="{{ task.status }}">
+
+                <td>
+                    <a href="{{ task.get_absolute_url }}" target="_blank">{{ task.id }} </a>
+                </td>
+                <td>
+                    {% if user.is_authenticated %}
+                        <a class="btn btn-primary btn-sm"
+                           href="{% url 'task-details' task.id my_tasks.number %}"
+                           data-popup-url="{% url 'task-details' task.id my_tasks.number %}"
+                           ><i class="fas fa-list"></i> Details
+                        </a>&nbsp;
+                    {% endif %}
+                </td>
+
+                {% if task.resume  %}
+                    <td class="bigger">{{ task.status }}</td>
+                {% endif %}
+                {% if not task.resume  %}
+                    <td class="bigger">{{ task.status }} (holding)</td>
+                {% endif %}
+
+                <td>{{ task.project }}</td>
+                <td>{{ task.sas_id }}</td>
+
+                <td>{{ task.filter }} </td>
+
+                {% if task.has_quality %}
+                {% for value in task.quality_as_list %}
+                    <td>{{value}}</td>
+                 {% endfor %}
+                {% endif %}
+
+
+                <td>
+
+                </tr>
+            </div>
+        {% endif %}
+
+{% endfor %}
+
+{% include "taskdatabase/modal/modal_script.html" %}
+{% include "taskdatabase/modal/modal.html" %}
\ No newline at end of file

atdb/taskdatabase/templates/taskdatabase/validation/tasks_validation_headers.html

+<tr>
+    <th>ID</th>
+    <th>Details</th>
+
+    <th>Status</th>
+    <th>Project</th>
+    <th>SAS_ID</th>
+    <th>filter</th>
+    <th>uv-coverage</th>
+    <th>Sensitivity</th>
+    <th>Conditions</th>
+    <th>Diagnostic plots</th>
+    <th>Summary parset</th>
+    <th>Summary logs</th>
+    <th>Summary hf5</th>
+</tr>
\ No newline at end of file

atdb/taskdatabase/templates/taskdatabase/validation/validation_page.html

+{% extends 'taskdatabase/base.html' %}
+{% load static %}
+
+{% block myBlock %}
+
+<div class="container-fluid details-container">
+      <div class="card">
+       <div class="card-body">
+        <div class="row">
+            <div class="col-8">
+                <h3>Validation</h3>
+                These are the tasks in status 'stored' that can be validated. Click one of the quality buttons to validate.
+                <hr>
+            </div>
+        </div>
+        <div class="row">
+        <div class="col-sm-12 col-md-12 col-lg-12">
+            {% include 'taskdatabase/pagination.html' %}
+            &nbsp;
+            {% if my_tasks %}
+            <div class="panel panel-success">
+
+                <div class="panel-body">
+
+                    <table class="table table-striped table-bordered table-sm">
+                        <thead>
+                        {% include 'taskdatabase/validation/tasks_validation_headers.html' %}
+                        </thead>
+                        <tbody>
+                        {% include 'taskdatabase/validation/tasks_validation.html' %}
+                        </tbody>
+                    </table>
+                    {% else %}
+                    <p>No recent Tasks.</p>
+                    {% endif %}
+
+                </div>
+            </div>
+            {% include 'taskdatabase/pagination.html' %}
+           </div>
+        </div>
+       </div>
+      </div>
+</div>
+
+{% include 'taskdatabase/localstorage_scripts.html' %}
+
+
+{% endblock %}
+

atdb/taskdatabase/urls.py

@@ -16,6 +16,8 @@ urlpatterns = [
     path('', views.IndexView.as_view(), name='index'),
     path('postprocessing-tasks', views.PostProcessingTasksView.as_view(), name='postprocessing-tasks'),
     path('quality', views.ShowQualityPage.as_view(), name='quality'),
+    path('validation', views.ShowValidationPage.as_view(), name='validation'),
+    path('failures', views.ShowFailuresPage.as_view(), name='failures'),
 
     path('task_details/<int:id>/<page>', views.TaskDetails, name='task-details'),
     path('task_details/', views.TaskDetails, name='task-details'),

atdb/taskdatabase/views.py

@@ -327,9 +327,72 @@ class PostProcessingTasksView(ListView):
 
 class ShowQualityPage(ListView):
     """
-    This is the main view of ATDB. It shows a pagination list of tasks, sorted by creationTime.
+    This shows the tasks that have a quality statistics in its outputs[0]['quality'].
+    Not that the global filter is also applied
+    """
+    template_name = 'taskdatabase/quality/quality_page.html'
+
+    # by default this returns the list in an object called object_list, so use 'object_list' in the html page.
+    # but if 'context_object_name' is defined, then this returned list is named and can be accessed that way in html.
+    context_object_name = 'my_tasks'
+
+    def get_queryset(self):
+        status = self.request.GET.get('status')
+        search_box = self.request.GET.get('search_box', None)
+
+        # get the sort variable from the session or use default
+        try:
+            sort = self.request.session['sort']
+        except:
+            sort = '-creationTime'
+
+        tasks = Task.objects.order_by(sort)
+
+        # check if there is a 'task_filter' put on the session
+        try:
+            filter = self.request.session['task_filter']
+            if filter != 'all':
+                tasks = get_searched_tasks(filter, sort)
+        except:
+            pass
+
+        if (search_box is not None):
+            tasks = get_searched_tasks(search_box, sort)
+
+        # exclude the tasks without quality information
+        tasks = tasks.exclude(outputs__isnull=True)
+        tasks = tasks.exclude(outputs__0__quality__isnull=True)
+
+
+        paginator = Paginator(tasks, config.TASKS_PER_PAGE)  # Show 50 tasks per page
+        page = self.request.GET.get('page')
+
+        try:
+            # check if there was a page on the session, if so, use it.
+            if page == None:
+                page = self.request.session['page']
+                self.request.session['page'] = None
+        except:
+            pass
+
+        try:
+            tasks = paginator.page(page)
+        except PageNotAnInteger:
+            # If page is not an integer, deliver first page.
+            tasks = paginator.page(1)
+        except EmptyPage:
+            # If page is out of range (e.g. 9999), deliver last page of results.
+            tasks = paginator.page(paginator.num_pages)
+
+        return tasks
+
+
+class ShowValidationPage(ListView):
+    """
+    This shows the tasks that are ready for validation
+    Not that the global filter is also applied
     """
-    template_name = 'taskdatabase/quality_page.html'
+    template_name = 'taskdatabase/validation/validation_page.html'
 
     # by default this returns the list in an object called object_list, so use 'object_list' in the html page.
     # but if 'context_object_name' is defined, then this returned list is named and can be accessed that way in html.
@@ -386,6 +449,69 @@ class ShowQualityPage(ListView):
         return tasks
 
 
+class ShowFailuresPage(ListView):
+    """
+    This shows the tasks that are ready for validation
+    Not that the global filter is also applied
+    """
+    template_name = 'taskdatabase/failures/failures_page.html'
+
+    # by default this returns the list in an object called object_list, so use 'object_list' in the html page.
+    # but if 'context_object_name' is defined, then this returned list is named and can be accessed that way in html.
+    context_object_name = 'my_tasks'
+
+    def get_queryset(self):
+        status = self.request.GET.get('status')
+        search_box = self.request.GET.get('search_box', None)
+
+        # get the sort variable from the session or use default
+        try:
+            sort = self.request.session['sort']
+        except:
+            sort = '-creationTime'
+
+        tasks = Task.objects.order_by(sort)
+
+        # check if there is a 'task_filter' put on the session
+        try:
+            filter = self.request.session['task_filter']
+            if filter != 'all':
+                tasks = get_searched_tasks(filter, sort)
+        except:
+            pass
+
+        if (search_box is not None):
+            tasks = get_searched_tasks(search_box, sort)
+
+        # exclude the tasks without quality information
+        tasks = tasks.exclude(outputs__isnull=True)
+        tasks = tasks.exclude(outputs__0__quality__isnull=True)
+
+
+        paginator = Paginator(tasks, config.TASKS_PER_PAGE)  # Show 50 tasks per page
+        page = self.request.GET.get('page')
+
+        try:
+            # check if there was a page on the session, if so, use it.
+            if page == None:
+                page = self.request.session['page']
+                self.request.session['page'] = None
+        except:
+            pass
+
+        try:
+            tasks = paginator.page(page)
+        except PageNotAnInteger:
+            # If page is not an integer, deliver first page.
+            tasks = paginator.page(1)
+        except EmptyPage:
+            # If page is out of range (e.g. 9999), deliver last page of results.
+            tasks = paginator.page(paginator.num_pages)
+
+        return tasks
+
+
+
 def get_searched_tasks(search, sort):
     tasks = Task.objects.filter(
         Q(id__contains=search) |