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Commit a6f1bb0a authored by David Rafferty's avatar David Rafferty
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Add target test

Former-commit-id: 66feb960
Former-commit-id: 1b53528c
parent 1d964c49
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......@@ -11,6 +11,7 @@ stages:
- download_data
- validate_cwl_scripts
- test_calibrator
- test_target
before_script:
- mkdir workdir
......@@ -43,4 +44,13 @@ run_hba_calibrator:
needs: ["download_data"]
script:
- cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_calibrator.cwl test_jobs/HBA_calibrator.json
- test_jobs/check_workflow_results.py results ../data/results_calibrator
- test_jobs/check_workflow_results.py results results_calibrator
- rm -f results
run_hba_target:
stage: test_target
allow_failure: true
needs: ["download_data"]
script:
- cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_target.cwl test_jobs/HBA_target.json
- test_jobs/check_workflow_results.py results results_target
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