From a6f1bb0a40247af73bc5879318c25fd43f908a7c Mon Sep 17 00:00:00 2001
From: David Rafferty <drafferty@hs.uni-hamburg.de>
Date: Fri, 13 Aug 2021 10:37:55 +0200
Subject: [PATCH] Add target test
Former-commit-id: 66feb960fcbbbbca25a6805fe967f9261ebba55b
Former-commit-id: 1b53528cb2719d390a88b2229ecb678682f1dccd
---
.gitlab-ci.yml | 12 +++++++++++-
1 file changed, 11 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index b96cbc82..55352615 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -11,6 +11,7 @@ stages:
- download_data
- validate_cwl_scripts
- test_calibrator
+ - test_target
before_script:
- mkdir workdir
@@ -43,4 +44,13 @@ run_hba_calibrator:
needs: ["download_data"]
script:
- cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_calibrator.cwl test_jobs/HBA_calibrator.json
- - test_jobs/check_workflow_results.py results ../data/results_calibrator
+ - test_jobs/check_workflow_results.py results results_calibrator
+ - rm -f results
+
+run_hba_target:
+ stage: test_target
+ allow_failure: true
+ needs: ["download_data"]
+ script:
+ - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_target.cwl test_jobs/HBA_target.json
+ - test_jobs/check_workflow_results.py results results_target
--
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