bugfix

Former-commit-id: 459f8d3c [formerly 26d41da8]
Former-commit-id: e3a80e6d
Former-commit-id: 6c810fbb

lofar-cwl/steps/gaincal.cwl

@@ -8,7 +8,7 @@ baseCommand:
   - DPPP
 inputs:
   - id: msin
-    type: Directory?
+    type: Directory
     inputBinding:
       position: 0
       prefix: msin=
@@ -110,7 +110,7 @@ outputs:
     doc: Output Measurement Set
     type: Directory
     outputBinding:
-      glob: '$(inputs.msout_name=="."?inputs.msin:inputs.msout_name)'
+      glob: '$(inputs.msout_name=="."?inputs.msin.basename:inputs.msout_name)'
   - id: h5parm
     doc: Filename of output H5Parm (to be read by e.g. losoto)
     type: File
@@ -129,6 +129,10 @@ hints:
   - class: DockerRequirement
     dockerPull: 'lofareosc/prefactor:HBAcalibrator'
 requirements:
+  - class: InitialWorkDirRequirement
+    listing:
+      - entry: $(inputs.msin)
+        writable: true
   - class: InlineJavascriptRequirement
 $schema:
   - 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl'

subworkflow/calib_targ.cwl

@@ -71,6 +71,8 @@ steps:
         source: BLsmooth/msout
       - id: msin_datacolumn
         default: SMOOTHED_DATA
+      - id: msout_name
+        default: '.'
       - id: sourcedb
         source: skymodel
       - id: parmdb