diff --git a/lofar-cwl/steps/gaincal.cwl b/lofar-cwl/steps/gaincal.cwl index 894068f51c465d3620cb64c1a7d527aeee70eae1..843045b50b86eadc653da5053f866244ae43534c 100644 --- a/lofar-cwl/steps/gaincal.cwl +++ b/lofar-cwl/steps/gaincal.cwl @@ -8,7 +8,7 @@ baseCommand: - DPPP inputs: - id: msin - type: Directory? + type: Directory inputBinding: position: 0 prefix: msin= @@ -110,7 +110,7 @@ outputs: doc: Output Measurement Set type: Directory outputBinding: - glob: '$(inputs.msout_name=="."?inputs.msin:inputs.msout_name)' + glob: '$(inputs.msout_name=="."?inputs.msin.basename:inputs.msout_name)' - id: h5parm doc: Filename of output H5Parm (to be read by e.g. losoto) type: File @@ -129,6 +129,10 @@ hints: - class: DockerRequirement dockerPull: 'lofareosc/prefactor:HBAcalibrator' requirements: + - class: InitialWorkDirRequirement + listing: + - entry: $(inputs.msin) + writable: true - class: InlineJavascriptRequirement $schema: - 'https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl' diff --git a/subworkflow/calib_targ.cwl b/subworkflow/calib_targ.cwl index 953822e585264f680093fe8fb753b2dedb5b3efd..706c5ab7b5f3432bbd4c4ee732adce38e2aebeb5 100644 --- a/subworkflow/calib_targ.cwl +++ b/subworkflow/calib_targ.cwl @@ -71,6 +71,8 @@ steps: source: BLsmooth/msout - id: msin_datacolumn default: SMOOTHED_DATA + - id: msout_name + default: '.' - id: sourcedb source: skymodel - id: parmdb