add all variables

Former-commit-id: 6b7beb5c

workflows/HBA_calibrator.cwl

@@ -7,47 +7,192 @@ $namespaces:
 inputs:
   - id: msin
     type: 'Directory[]'
-    'sbg:x': -524.25
-    'sbg:y': -397.7361145019531
+    'sbg:x': -1000
+    'sbg:y': -1700
+  - id: refant
+    type: string?
+    default: CS001HBA0
+    'sbg:x': -1000
+    'sbg:y': -1600
+  - id: flag_baselines
+    type: 'string[]?'
+    default: []
+    'sbg:x': -1000
+    'sbg:y': -1500
+  - id: process_baselines_cal
+    type: string?
+    default: '*&'
+    'sbg:x': -1000
+    'sbg:y': -1400
+  - id: filter_baselines
+    type: string?
+    default: '*&'
+    'sbg:x': -1000
+    'sbg:y': -1300
+  - id: do_smooth
+    type: boolean?
+    default: false
+    'sbg:x': -1000
+    'sbg:y': -1200
+  - id: rfistrategy
+    type: string?
+    default: HBAdefault.rfis
+    'sbg:x': -1000
+    'sbg:y': -1100
+  - id: max2interpolate
+    type: int?
+    default: 30
+    'sbg:x': -1000
+    'sbg:y': -1000
+  - id: ampRange
+    type: 'int[]?'
+    default:
+      - 0
+      - 0
+    'sbg:x': -1000
+    'sbg:y': -900
+  - id: skip_international
+    type: boolean?
+    default: true
+    'sbg:x': -1000
+    'sbg:y': -800
   - id: raw_data
     type: boolean?
     default: false
-    'sbg:x': -499.4583435058594
-    'sbg:y': -700.1944580078125
-  - id: memoryperc
+    'sbg:x': -1000
+    'sbg:y': -700
+  - id: propagatesolutions
+    type: boolean?
+    default: true
+    'sbg:x': -1000
+    'sbg:y': -600
+  - id: flagunconverged
+    type: boolean?
+    default: false
+    'sbg:x': -1000
+    'sbg:y': -500
+  - id: maxStddev
+    type: float?
+    default: -1.0
+    'sbg:x': -1000
+    'sbg:y': -400
+  - id: solutions2transfer
+    type: File?
+    default: /data/solutions/3C48.h5
+    'sbg:x': -1000
+    'sbg:y': -300
+  - id: antennas2transfer
+    type: File?
+    default: '[FUSPID].*'
+    'sbg:x': -1000
+    'sbg:y': -200
+  - id: demix_sources
+    type: 'string[]?'
+    default:
+      - CasA
+      - CygA
+    'sbg:x': -1000
+    'sbg:y': -100
+  - id: demix_target
+    type: string?
+    default: ''
+    'sbg:x': -1000
+    'sbg:y': 0
+  - id: demix_freqstep
     type: int?
-    default: 20
-    'sbg:x': -519.2446899414062
-    'sbg:y': -98.3177261352539
+    default: 16
+    'sbg:x': -1000
+    'sbg:y': 100
+  - id: demix_timestep
+    type: int?
+    default: 10
+    'sbg:x': -1000
+    'sbg:y': 200
+  - id: raw_data
+    type: boolean?
+    default: false
+    'sbg:x': -1000
+    'sbg:y': 300
   - id: demix
     type: boolean?
     default: false
-    'sbg:x': -508.2083435058594
-    'sbg:y': 359.7083435058594
-  - id: baselines_to_flag
-    type: 'string[]?'
-    default: []
-    'sbg:x': -506.8194580078125
-    'sbg:y': 503.4721984863281
-  - id: min_separation
+    'sbg:x': -1000
+    'sbg:y': 400
+  - id: ion_3rd
+    type: boolean?
+    default: false
+    'sbg:x': -1000
+    'sbg:y': 500
+  - id: clock_smooth
+    type: boolean?
+    default: true
+    'sbg:x': -1000
+    'sbg:y': 600
+  - id: tables2export
+    type: string?
+    default: clock
+    'sbg:x': -1000
+    'sbg:y': 700
+  - id: final_apply
+    type: boolean?
+    default: false
+    'sbg:x': -1000
+    'sbg:y': 800
+  - id: memoryperc
+    type: int?
+    default: 20
+    'sbg:x': -1000
+    'sbg:y': 900
+  - id: min_length
+    type: int?
+    default: 50
+    'sbg:x': -1000
+    'sbg:y': 1000
+  - id: overhead
     type: float?
+    default: 0.8
+    'sbg:x': -1000
+    'sbg:y': 1100
+  - id: min_separation
+    type: int?
     default: 30
-    'sbg:x': -525
-    'sbg:y': -249.46209716796875
+    'sbg:x': -1000
+    'sbg:y': 1200
+  - id: max_separation_arcmin
+    type: float?
+    default: 1
+    'sbg:x': -1000
+    'sbg:y': 1300
+  - id: calibrator_path_skymodel
+    type: Directory?
+    default: /data/skymodels
+    'sbg:x': -1000
+    'sbg:y': 1400
   - id: A-Team_sky_model
     type: File?
-    'sbg:x': -509
-    'sbg:y': 679.407958984375
-  - id: freqresolution
-    type: string
-    default: '48.82kHz '
-    'sbg:x': -499.0240478515625
-    'sbg:y': 231.7971649169922
-  - id: timeresolution
-    type: float
-    default: 4.
-    'sbg:x': -502.6177673339844
-    'sbg:y': -846.1633911132812
+    default: /data/skymodels/Ateam_LBA_CC.skymodel
+    'sbg:x': -1000
+    'sbg:y': 1500
+  - id: cal_solutions
+    type: string?
+    default: cal_solutions.h5
+    'sbg:x': -1000
+    'sbg:y': 1600
+  - id: avg_timeresolution
+    type: float?
+    default: 4
+    'sbg:x': -1000
+    'sbg:y': 1700
+  - id: avg_freqresolution
+    type: string?
+    default: 48.82kHz
+    'sbg:x': -1000
+    'sbg:y': 1800
+  - id: bandpass_freqresolution
+    type: string?
+    default: 195.3125kHz
+    'sbg:x': -1000
+    'sbg:y': 1900
 outputs:
   - id: msout
     outputSource:
@@ -88,26 +233,78 @@ outputs:
 steps:
   - id: prefactor
     in:
+      - id: msin
+        source: msin
+      - id: refant
+        source: refant
+      - id: flag_baselines
+        source: flag_baselines
+      - id: process_baselines_cal
+        source: process_baselines_cal
+      - id: filter_baselines
+        source: filter_baselines
+      - id: do_smooth
+        source: do_smooth
+      - id: rfistrategy
+        source: rfistrategy
+      - id: max2interpolate
+        source: max2interpolate
+      - id: ampRange
+        source: ampRange
+      - id: skip_international
+        source: skip_international
       - id: raw_data
         source: raw_data
+      - id: propagatesolutions
+        source: propagatesolutions
+      - id: flagunconverged
+        source: flagunconverged
+      - id: maxStddev
+        source: maxStddev
+      - id: solutions2transfer
+        source: solutions2transfer
+      - id: antennas2transfer
+        source: antennas2transfer
+      - id: demix_sources
+        source: demix_sources
+      - id: demix_target
+        source: demix_target
+      - id: demix_freqstep
+        source: demix_freqstep
+      - id: demix_timestep
+        source: demix_timestep
       - id: demix
         source: demix
-      - id: msin
-        source:
-          - msin
+      - id: ion_3rd
+        source: ion_3rd
+      - id: clock_smooth
+        source: clock_smooth
+      - id: tables2export
+        source: tables2export
+      - id: final_apply
+        source: final_apply
       - id: memoryperc
         source: memoryperc
-      - id: baselines_to_flag
-        source:
-          - baselines_to_flag
+      - id: min_length
+        source: min_length
+      - id: overhead
+        source: overhead
       - id: min_separation
         source: min_separation
+      - id: max_separation_arcmin
+        source: max_separation_arcmin
+      - id: calibrator_path_skymodel
+        source: calibrator_path_skymodel
       - id: A-Team_sky_model
-        source: A-Team_sky_model
-      - id: timeresolution
-        source: timeresolution
-      - id: freqresolution
-        source: freqresolution
+        source: Team_sky_model
+      - id: cal_solutions
+        source: cal_solutions
+      - id: avg_timeresolution
+        source: avg_timeresolution
+      - id: avg_freqresolution
+        source: avg_freqresolution
+      - id: bandpass_freqresolution
+        source: bandpass_freqresolution
     out:
       - id: check_Ateam_separation.png
       - id: check_Ateam_separation.log
@@ -117,7 +314,7 @@ steps:
       - id: parset
     run: ./prefactor_calibrator_test.cwl
     label: prefactor_calibrator
-    'sbg:x': -107.87364959716797
-    'sbg:y': -53.743682861328125
+    'sbg:x': 0
+    'sbg:y': 0
 requirements:
   - class: SubworkflowFeatureRequirement