From 3b8217d4a84f68b5e0fe5aa6fd3b933bd41317a5 Mon Sep 17 00:00:00 2001
From: Alexander Drabent <alex@transitix>
Date: Thu, 16 Jan 2020 11:13:41 +0100
Subject: [PATCH] add all variables
Former-commit-id: 6b7beb5cee8bedf5b0f1dd349c7d953d46eda06e
---
workflows/HBA_calibrator.cwl | 283 +++++++++++++++++++++++++++++------
1 file changed, 240 insertions(+), 43 deletions(-)
diff --git a/workflows/HBA_calibrator.cwl b/workflows/HBA_calibrator.cwl
index d86ac47d..101392e7 100644
--- a/workflows/HBA_calibrator.cwl
+++ b/workflows/HBA_calibrator.cwl
@@ -7,47 +7,192 @@ $namespaces:
inputs:
- id: msin
type: 'Directory[]'
- 'sbg:x': -524.25
- 'sbg:y': -397.7361145019531
+ 'sbg:x': -1000
+ 'sbg:y': -1700
+ - id: refant
+ type: string?
+ default: CS001HBA0
+ 'sbg:x': -1000
+ 'sbg:y': -1600
+ - id: flag_baselines
+ type: 'string[]?'
+ default: []
+ 'sbg:x': -1000
+ 'sbg:y': -1500
+ - id: process_baselines_cal
+ type: string?
+ default: '*&'
+ 'sbg:x': -1000
+ 'sbg:y': -1400
+ - id: filter_baselines
+ type: string?
+ default: '*&'
+ 'sbg:x': -1000
+ 'sbg:y': -1300
+ - id: do_smooth
+ type: boolean?
+ default: false
+ 'sbg:x': -1000
+ 'sbg:y': -1200
+ - id: rfistrategy
+ type: string?
+ default: HBAdefault.rfis
+ 'sbg:x': -1000
+ 'sbg:y': -1100
+ - id: max2interpolate
+ type: int?
+ default: 30
+ 'sbg:x': -1000
+ 'sbg:y': -1000
+ - id: ampRange
+ type: 'int[]?'
+ default:
+ - 0
+ - 0
+ 'sbg:x': -1000
+ 'sbg:y': -900
+ - id: skip_international
+ type: boolean?
+ default: true
+ 'sbg:x': -1000
+ 'sbg:y': -800
- id: raw_data
type: boolean?
default: false
- 'sbg:x': -499.4583435058594
- 'sbg:y': -700.1944580078125
- - id: memoryperc
+ 'sbg:x': -1000
+ 'sbg:y': -700
+ - id: propagatesolutions
+ type: boolean?
+ default: true
+ 'sbg:x': -1000
+ 'sbg:y': -600
+ - id: flagunconverged
+ type: boolean?
+ default: false
+ 'sbg:x': -1000
+ 'sbg:y': -500
+ - id: maxStddev
+ type: float?
+ default: -1.0
+ 'sbg:x': -1000
+ 'sbg:y': -400
+ - id: solutions2transfer
+ type: File?
+ default: /data/solutions/3C48.h5
+ 'sbg:x': -1000
+ 'sbg:y': -300
+ - id: antennas2transfer
+ type: File?
+ default: '[FUSPID].*'
+ 'sbg:x': -1000
+ 'sbg:y': -200
+ - id: demix_sources
+ type: 'string[]?'
+ default:
+ - CasA
+ - CygA
+ 'sbg:x': -1000
+ 'sbg:y': -100
+ - id: demix_target
+ type: string?
+ default: ''
+ 'sbg:x': -1000
+ 'sbg:y': 0
+ - id: demix_freqstep
type: int?
- default: 20
- 'sbg:x': -519.2446899414062
- 'sbg:y': -98.3177261352539
+ default: 16
+ 'sbg:x': -1000
+ 'sbg:y': 100
+ - id: demix_timestep
+ type: int?
+ default: 10
+ 'sbg:x': -1000
+ 'sbg:y': 200
+ - id: raw_data
+ type: boolean?
+ default: false
+ 'sbg:x': -1000
+ 'sbg:y': 300
- id: demix
type: boolean?
default: false
- 'sbg:x': -508.2083435058594
- 'sbg:y': 359.7083435058594
- - id: baselines_to_flag
- type: 'string[]?'
- default: []
- 'sbg:x': -506.8194580078125
- 'sbg:y': 503.4721984863281
- - id: min_separation
+ 'sbg:x': -1000
+ 'sbg:y': 400
+ - id: ion_3rd
+ type: boolean?
+ default: false
+ 'sbg:x': -1000
+ 'sbg:y': 500
+ - id: clock_smooth
+ type: boolean?
+ default: true
+ 'sbg:x': -1000
+ 'sbg:y': 600
+ - id: tables2export
+ type: string?
+ default: clock
+ 'sbg:x': -1000
+ 'sbg:y': 700
+ - id: final_apply
+ type: boolean?
+ default: false
+ 'sbg:x': -1000
+ 'sbg:y': 800
+ - id: memoryperc
+ type: int?
+ default: 20
+ 'sbg:x': -1000
+ 'sbg:y': 900
+ - id: min_length
+ type: int?
+ default: 50
+ 'sbg:x': -1000
+ 'sbg:y': 1000
+ - id: overhead
type: float?
+ default: 0.8
+ 'sbg:x': -1000
+ 'sbg:y': 1100
+ - id: min_separation
+ type: int?
default: 30
- 'sbg:x': -525
- 'sbg:y': -249.46209716796875
+ 'sbg:x': -1000
+ 'sbg:y': 1200
+ - id: max_separation_arcmin
+ type: float?
+ default: 1
+ 'sbg:x': -1000
+ 'sbg:y': 1300
+ - id: calibrator_path_skymodel
+ type: Directory?
+ default: /data/skymodels
+ 'sbg:x': -1000
+ 'sbg:y': 1400
- id: A-Team_sky_model
type: File?
- 'sbg:x': -509
- 'sbg:y': 679.407958984375
- - id: freqresolution
- type: string
- default: '48.82kHz '
- 'sbg:x': -499.0240478515625
- 'sbg:y': 231.7971649169922
- - id: timeresolution
- type: float
- default: 4.
- 'sbg:x': -502.6177673339844
- 'sbg:y': -846.1633911132812
+ default: /data/skymodels/Ateam_LBA_CC.skymodel
+ 'sbg:x': -1000
+ 'sbg:y': 1500
+ - id: cal_solutions
+ type: string?
+ default: cal_solutions.h5
+ 'sbg:x': -1000
+ 'sbg:y': 1600
+ - id: avg_timeresolution
+ type: float?
+ default: 4
+ 'sbg:x': -1000
+ 'sbg:y': 1700
+ - id: avg_freqresolution
+ type: string?
+ default: 48.82kHz
+ 'sbg:x': -1000
+ 'sbg:y': 1800
+ - id: bandpass_freqresolution
+ type: string?
+ default: 195.3125kHz
+ 'sbg:x': -1000
+ 'sbg:y': 1900
outputs:
- id: msout
outputSource:
@@ -88,26 +233,78 @@ outputs:
steps:
- id: prefactor
in:
+ - id: msin
+ source: msin
+ - id: refant
+ source: refant
+ - id: flag_baselines
+ source: flag_baselines
+ - id: process_baselines_cal
+ source: process_baselines_cal
+ - id: filter_baselines
+ source: filter_baselines
+ - id: do_smooth
+ source: do_smooth
+ - id: rfistrategy
+ source: rfistrategy
+ - id: max2interpolate
+ source: max2interpolate
+ - id: ampRange
+ source: ampRange
+ - id: skip_international
+ source: skip_international
- id: raw_data
source: raw_data
+ - id: propagatesolutions
+ source: propagatesolutions
+ - id: flagunconverged
+ source: flagunconverged
+ - id: maxStddev
+ source: maxStddev
+ - id: solutions2transfer
+ source: solutions2transfer
+ - id: antennas2transfer
+ source: antennas2transfer
+ - id: demix_sources
+ source: demix_sources
+ - id: demix_target
+ source: demix_target
+ - id: demix_freqstep
+ source: demix_freqstep
+ - id: demix_timestep
+ source: demix_timestep
- id: demix
source: demix
- - id: msin
- source:
- - msin
+ - id: ion_3rd
+ source: ion_3rd
+ - id: clock_smooth
+ source: clock_smooth
+ - id: tables2export
+ source: tables2export
+ - id: final_apply
+ source: final_apply
- id: memoryperc
source: memoryperc
- - id: baselines_to_flag
- source:
- - baselines_to_flag
+ - id: min_length
+ source: min_length
+ - id: overhead
+ source: overhead
- id: min_separation
source: min_separation
+ - id: max_separation_arcmin
+ source: max_separation_arcmin
+ - id: calibrator_path_skymodel
+ source: calibrator_path_skymodel
- id: A-Team_sky_model
- source: A-Team_sky_model
- - id: timeresolution
- source: timeresolution
- - id: freqresolution
- source: freqresolution
+ source: Team_sky_model
+ - id: cal_solutions
+ source: cal_solutions
+ - id: avg_timeresolution
+ source: avg_timeresolution
+ - id: avg_freqresolution
+ source: avg_freqresolution
+ - id: bandpass_freqresolution
+ source: bandpass_freqresolution
out:
- id: check_Ateam_separation.png
- id: check_Ateam_separation.log
@@ -117,7 +314,7 @@ steps:
- id: parset
run: ./prefactor_calibrator_test.cwl
label: prefactor_calibrator
- 'sbg:x': -107.87364959716797
- 'sbg:y': -53.743682861328125
+ 'sbg:x': 0
+ 'sbg:y': 0
requirements:
- class: SubworkflowFeatureRequirement
--
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