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LoSoTo.Abs.cwl 1.09 KiB
#!/usr/bin/env cwl-runner
class: CommandLineTool
cwlVersion: v1.0
id: losoto_abs
$namespaces:
lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
doc: |
Take absolute value. Needed before smooth if amplitudes are negative!
WEIGHT: no need to be weight compliant
requirements:
InitialWorkDirRequirement:
listing:
- entryname: 'parset.config'
entry: |
[abs]
soltab = $(inputs.soltab)
operation = ABS
- entryname: $(inputs.input_h5parm.basename)
entry: $(inputs.input_h5parm)
writable: true
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
hints:
DockerRequirement:
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
type: File
format: lofar:#H5Parm
- id: soltab
type: string
doc: "Solution table"
outputs:
- id: output_h5parm
type: File
format: lofar:#H5Parm
outputBinding:
glob: $(inputs.input_h5parm.basename)
$schema:
- https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl