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Commit 976ce59b authored by alex's avatar alex
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finish bandpass step 

Former-commit-id: 86c94e94
Former-commit-id: 892cbd71
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with 62 additions and 29 deletions
lofar-cwl/steps/H5ParmCollector.cwl
+ 3
− 2
View file @ 976ce59b
......@@ -76,13 +76,14 @@ outputs:
outputBinding:
glob: $(inputs.outh5parmname)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.outh5parmname)-parm_collector_output.log
glob: '$(inputs.outh5parmname)-parm_collector_output*.log'
label: H5parm_collector
hints:
- class: DockerRequirement
dockerPull: 'lofareosc/prefactor:HBAcalibrator'
stdout: $(inputs.outh5parmname)-parm_collector_output.log
stderr: $(inputs.outh5parmname)-parm_collector_output_err.log
requirements:
- class: InlineJavascriptRequirement
\ No newline at end of file
lofar-cwl/steps/LoSoTo.Abs.cwl
+ 2
− 1
View file @ 976ce59b
......@@ -25,12 +25,13 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
hints:
DockerRequirement:
dockerPull: lofareosc/lofar-pipeline-ci:latest
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
......
lofar-cwl/steps/LoSoTo.Clip.cwl
+ 2
− 1
View file @ 976ce59b
......@@ -26,12 +26,13 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
hints:
DockerRequirement:
dockerPull: lofareosc/lofar-pipeline-ci:latest
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
......
lofar-cwl/steps/LoSoTo.Duplicate.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -25,6 +25,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -49,11 +50,12 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$namespaces:
lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
$schema:
......
lofar-cwl/steps/LoSoTo.Faraday.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -27,6 +27,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -61,11 +62,12 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$schema:
- https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
lofar-cwl/steps/LoSoTo.Flag.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -27,6 +27,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -102,10 +103,11 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$schema:
- https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
lofar-cwl/steps/LoSoTo.FlagStation.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -26,6 +26,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -101,10 +102,11 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$schema:
- https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
lofar-cwl/steps/LoSoTo.Flagextend.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -28,6 +28,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -68,10 +69,11 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$schema:
- https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
lofar-cwl/steps/LoSoTo.Interpolate.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -29,6 +29,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -79,10 +80,11 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: logfile
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$schema:
- https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
lofar-cwl/steps/LoSoTo.Lofarbeam.cwl
+ 2
− 1
View file @ 976ce59b
......@@ -25,12 +25,13 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
hints:
DockerRequirement:
dockerPull: lofareosc/lofar-pipeline-ci:latest
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
......
lofar-cwl/steps/LoSoTo.Norm.cwl
+ 2
− 1
View file @ 976ce59b
......@@ -26,12 +26,13 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
hints:
DockerRequirement:
dockerPull: lofareosc/lofar-pipeline-ci:latest
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
......
lofar-cwl/steps/LoSoTo.Plot.cwl
+ 7
− 1
View file @ 976ce59b
......@@ -24,6 +24,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -130,11 +131,16 @@ outputs:
outputBinding:
glob: "$(inputs.prefix)*.png"
- id: logfile
type: File[]
outputBinding:
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
- id: parset
type: File
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: parset.config
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$namespaces:
......
lofar-cwl/steps/LoSoTo.Polalign.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -43,6 +43,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -89,8 +90,9 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
lofar-cwl/steps/LoSoTo.Replicateonaxis.cwl
+ 1
− 1
View file @ 976ce59b
......@@ -42,7 +42,7 @@ arguments:
hints:
DockerRequirement:
dockerPull: lofareosc/lofar-pipeline-ci:latest
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
......
lofar-cwl/steps/LoSoTo.Reset.cwl
+ 2
− 1
View file @ 976ce59b
......@@ -24,12 +24,13 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
hints:
DockerRequirement:
dockerPull: lofareosc/lofar-pipeline-ci:latest
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
......
lofar-cwl/steps/LoSoTo.Residual.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -24,6 +24,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -53,11 +54,12 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$namespaces:
lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
......
lofar-cwl/steps/LoSoTo.Reweight.cwl
+ 4
− 2
View file @ 976ce59b
......@@ -27,6 +27,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......@@ -78,10 +79,11 @@ outputs:
outputBinding:
glob: $(inputs.input_h5parm.basename)
- id: log
type: File
type: File[]
outputBinding:
glob: $(inputs.input_h5parm.basename)-losoto.log
glob: '$(inputs.input_h5parm.basename)-losoto*.log'
stdout: $(inputs.input_h5parm.basename)-losoto.log
stderr: $(inputs.input_h5parm.basename)-losoto_err.log
$schema:
- https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
lofar-cwl/steps/LoSoTo.Smooth.cwl
+ 1
− 0
View file @ 976ce59b
......@@ -30,6 +30,7 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
......
lofar-cwl/steps/LoSoTo.Splitleak.cwl
+ 2
− 1
View file @ 976ce59b
......@@ -24,12 +24,13 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
hints:
DockerRequirement:
dockerPull: lofareosc/lofar-pipeline-ci:latest
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
......
lofar-cwl/steps/LoSoTo.Structure.cwl
+ 2
− 1
View file @ 976ce59b
......@@ -27,12 +27,13 @@ requirements:
baseCommand: "losoto"
arguments:
- '--verbose'
- $(inputs.input_h5parm.basename)
- parset.config
hints:
DockerRequirement:
dockerPull: lofareosc/lofar-pipeline-ci:latest
dockerPull: lofareosc/prefactor:HBAcalibrator
inputs:
- id: input_h5parm
......
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