Add comparison oskar stationresponse

.gitlab-ci.yml

@@ -95,6 +95,9 @@ build-compare-oskar:
     - export NPIXELS=8 && export APPLY_TRANSPOSE=OFF && MAX_ORDER=3 && TOLERANCE=1e-12
     - cd /opt/everybeam/build
     - make VERBOSE=1 comparison-oskar
+    # Run OSKAR stationresponse comparison
+    - export NPIXELS=32 && TOLERANCE=1e-5
+    - make VERBOSE=1 comparison-oskar-stationresponse
 
 deploy-doc:
   stage: deploy

demo/comparison-oskar/CMakeLists.txt

@@ -3,11 +3,11 @@
 add_executable(comparison-oskar-generate-beampattern main.cpp)
 target_link_libraries(comparison-oskar-generate-beampattern oskar)
 
-add_executable(comparison-oskar-station-response stationresponse.cpp)
-target_link_libraries(comparison-oskar-station-response everybeam)
+add_executable(comparison-oskar-generate-station-response stationresponse.cpp)
+target_link_libraries(comparison-oskar-generate-station-response everybeam)
 
 # Required to get the config.h header
-target_include_directories(comparison-oskar-station-response PRIVATE "${CMAKE_BINARY_DIR}")
+target_include_directories(comparison-oskar-generate-station-response PRIVATE "${CMAKE_BINARY_DIR}")
 
 
 file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/telescope.tm/layout.txt"
@@ -19,17 +19,23 @@ file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/telescope.tm/position.txt"
 file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/telescope.tm/station000/layout.txt"
      DESTINATION "${CMAKE_CURRENT_BINARY_DIR}/station000/telescope.tm")
 
+execute_process( COMMAND ${CMAKE_COMMAND} -E copy_directory
+    "${CMAKE_CURRENT_SOURCE_DIR}/skalowmini-coef.tm" "${CMAKE_CURRENT_BINARY_DIR}/skalowmini-coef.tm")
+
+
 #------------------------------------------------------------------------------
 # comparison-oskar knits together the cpp code and the python scripts     
 add_custom_target(comparison-oskar
      COMMAND ${CMAKE_COMMAND} -E env
          EXTRA_PATH="${CMAKE_CURRENT_BINARY_DIR}:${CMAKE_SOURCE_DIR}/scripts/coeff_scripts"
-         TOLERANCE=1e-12
      "${CMAKE_CURRENT_SOURCE_DIR}/generate_basefunction_plots.sh"
      DEPENDS comparison-oskar-generate-beampattern
 )
 
-add_test(NAME comparison-oskar-test
-     CONFIGURATIONS integration
-     COMMAND make comparison-oskar)
+add_custom_target(comparison-oskar-station-response
+     COMMAND ${CMAKE_COMMAND} -E env
+         EXTRA_PATH="${CMAKE_CURRENT_BINARY_DIR}:${CMAKE_SOURCE_DIR}/scripts/coeff_scripts:${CMAKE_SOURCE_DIR}/scripts/misc"
+     "${CMAKE_CURRENT_SOURCE_DIR}/compare_stationresponse.sh"
+     DEPENDS comparison-oskar-generate-station-response
+)
 

demo/comparison-oskar/compare_stationresponse.py

+import os
+import sys
+import numpy as np
+from read_oskar_beams import read_oskar_beams
+import run_oskar_simulation
+import subprocess
+
+
+tolerance = float(os.environ["TOLERANCE"]) if "TOLERANCE" in os.environ else 0.0
+npixels = int(os.environ["NPIXELS"]) if "NPIXELS" in os.environ else 256
+
+
+run_oskar_simulation.main(npixels)
+subprocess.check_call(["add_beaminfo.py", "skalowmini-coef.MS", "skalowmini-coef.tm"])
+subprocess.check_call(["oskar_csv_to_hdf5.py", "skalowmini-coef.tm", "oskar.h5"])
+subprocess.check_call(["./comparison-oskar-generate-station-response", str(npixels)])
+
+A = read_oskar_beams()
+B = np.load('station-response.npy')
+
+if tolerance:
+    difference = np.nanmax(np.abs(A - B))
+    if difference > tolerance:
+        sys.exit(
+            "Difference between OSKAR and EveryBeam spherical wave model is {}, which is larger than the tolerance {}".format(
+                difference, tolerance
+            )
+        )
+

demo/comparison-oskar/compare_stationresponse.sh

+#!/bin/sh
+
+export PATH=$EXTRA_PATH:$PATH
+python3 -B `dirname "${0}"`/compare_stationresponse.py
+

demo/comparison-oskar/generate_basefunction_plots.sh

 #!/bin/sh
 
 export PATH=$EXTRA_PATH:$PATH
-export TOLERANCE="1e-12"
 python3 -B `dirname "${0}"`/generate_basefunction_plots.py
 

demo/comparison-oskar/make_plots.py

+import numpy as np
+from matplotlib import pyplot as plt
+from read_oskar_beams import read_oskar_beams
+
+A = read_oskar_beams()
+B = np.load('station-response.npy')
+
+B = B-A
+
+#B = np.load('response.npy')
+
+for ant_xy_idx in range(2):
+
+    plt.subplot(2, 4, 1 + ant_xy_idx*4)
+    plt.imshow(np.abs(B[:, :, ant_xy_idx, 0]).T, origin="lower")
+    plt.colorbar()
+    plt.title("abs(Etheta)")
+
+    plt.subplot(2, 4, 2 + ant_xy_idx*4)
+    plt.imshow(np.abs(B[:, :, ant_xy_idx, 1]).T, origin="lower")
+    plt.colorbar()
+    plt.title("abs(Ephi)")
+
+    plt.subplot(2, 4, 3 + ant_xy_idx*4)
+    plt.imshow(
+        np.angle(B[:, :, ant_xy_idx, 0]).T, clim=(-np.pi, np.pi), cmap="twilight", origin="lower"
+    )
+    plt.colorbar()
+    plt.title("angle(Etheta)")
+
+    plt.subplot(2, 4, 4 + ant_xy_idx*4)
+    plt.imshow(
+        np.angle(B[:, :, ant_xy_idx, 1]).T, clim=(-np.pi, np.pi), cmap="twilight", origin="lower"
+    )
+    plt.colorbar()
+    plt.title("angle(Ephi)")
+
+plt.show()

demo/comparison-oskar/read_oskar_beams.py

@@ -59,12 +59,12 @@ if __name__ == "__main__":
     A = read_oskar_beams()
 
     plt.subplot(2, 2, 1)
-    plt.imshow(np.abs(A[:, :, 0, 0]).T, clim=(0, 0.25), origin="lower")
+    plt.imshow(np.abs(A[:, :, 0, 0]).T, origin="lower")
     plt.colorbar()
     plt.title("abs(Etheta)")
 
     plt.subplot(2, 2, 2)
-    plt.imshow(np.abs(A[:, :, 0, 1]).T, clim=(0, 0.25), origin="lower")
+    plt.imshow(np.abs(A[:, :, 0, 1]).T, origin="lower")
     plt.colorbar()
     plt.title("abs(Ephi)")
 

demo/comparison-oskar/run_oskar.py

@@ -125,7 +125,7 @@ def main(npixels):
         'basefunctions': {
             'telescope/input_directory': 'telescope.tm',
             'telescope/aperture_array/element_pattern/enable_numerical': True,
-            'telescope/aperture_array/element_pattern/swap_xy': True,
+            'telescope/aperture_array/element_pattern/swap_xy': False,
             'telescope/aperture_array/array_pattern/enable': False
         },
     }

demo/comparison-oskar/run_oskar_simulation.py

@@ -21,7 +21,7 @@ import oskar
 
 def get_start_time(ra0_deg, length_sec):
     """Returns optimal start time for field RA and observation length."""
-    t = Time('2000-01-01 00:00:00', scale='utc', location=('116.764d', '0d'))
+    t = Time('2000-01-01 12:00:00', scale='utc', location=('116.764d', '0d'))
     dt_hours = (24.0 - t.sidereal_time('apparent').hour) / 1.0027379
     dt_hours += (ra0_deg / 15.0)
     start = t + TimeDelta(dt_hours * 3600.0 - length_sec / 2.0, format='sec')
@@ -37,7 +37,7 @@ def main(npixels):
     # Define some basic observation parameters.
     ra0_deg = 0.0
     dec0_deg = -27.0
-    length_sec = 3600.0*6
+    length_sec = 60 # 3600.0*6
 
     # Define base settings dictionary.
     common_settings = {
@@ -64,9 +64,9 @@ def main(npixels):
     telescopes = {
         #'stationresponse': {
         'basefunctions': {
-            'telescope/input_directory': 'telescope.tm',
+            'telescope/input_directory': 'skalowmini-coef.tm',
             'telescope/aperture_array/element_pattern/enable_numerical': True,
-            'telescope/aperture_array/element_pattern/swap_xy': True,
+            'telescope/aperture_array/element_pattern/swap_xy': False,
             'telescope/aperture_array/array_pattern/enable': True,
             'telescope/aperture_array/array_pattern/normalise': True
         },
@@ -93,7 +93,7 @@ def main(npixels):
             tel_root = re.sub(r'[^\w]', '', tel)  # Strip symbols from tel.
             root_path = tel_root + ('_%03d_MHz' % freq)
             settings['observation/start_frequency_hz'] = 1e6 * freq
-            settings['interferometer/ms_filename'] = 'blah.ms'
+            settings['interferometer/ms_filename'] = 'skalowmini-coef.MS'
 
             # Run the app with the settings file.
             subprocess.call([app1, settings_path])
@@ -120,4 +120,4 @@ def main(npixels):
 
 
 if __name__ == '__main__':
-    main(32)
+    main(256)

demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_im_0_110.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_im_0_137.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_im_0_160.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_im_0_230.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_im_0_320.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_im_0_50.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_im_0_70.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_re_0_110.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_re_0_137.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_re_0_160.txt

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demo/comparison-oskar/skalowmini-coef.tm/element_pattern_spherical_wave_x_te_re_0_230.txt

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