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Commit d075b6aa authored by alex's avatar alex
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test new losoto version 2.3

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......@@ -181,14 +181,14 @@ Typical reasons for which you would like to run **LINC** with a cached Singulari
* when running into a Docker pull limit.
* when compute nodes do not have an outbound connection to the internet or any similar firewall restrictions.
In such cases you need to set a special CWL environment variable to make use of it:
In such cases you need to set a special CWL environment variable to make use of it::
$ export CWL_SINGULARITY_CACHE=<cachedir>
$ export SINGULARITY_TMPDIR=<cachedir>/tmp
where ``<cachedir>`` is your chosen location of the Singularity image. When running **LINC**, the location of the ``<cachedir>`` should be visible from all compute nodes or machines you want to use. Once set simply restart your pipeline with ``--singularity`` and the image should be put into the right directory and be used for all steps.
Setting ``$SINGULARITY_TMPDIR`` is optional and avoids temporary mounting of the images in your ``/tmp``-directory. This is particularly helpful if your ``/tmp``-directory does not have much disk space.
If you need to update your **LINC** Singularity image, simply remove the ``astronrd_linc.sif`` file in your ``<cachedir>`` and clean the Singularity cache:
If you need to update your **LINC** Singularity image, simply remove the ``astronrd_linc.sif`` file in your ``<cachedir>`` and clean the Singularity cache::
$ singularity cache clean
......
......@@ -35,7 +35,7 @@ setup(
'Topic :: Scientific/Engineering :: Astronomy'],
platforms='any',
install_requires=[
'aplpy', 'astropy', 'bdsf', 'h5py', 'losoto==2.2.1', 'lsmtool',
'aplpy', 'astropy', 'bdsf', 'h5py', 'losoto==2.3', 'lsmtool',
'matplotlib', 'numpy<1.23.0', 'python-casacore', 'RMextract', 'scipy'],
scripts=glob.glob('scripts/*'),
data_files=data_files,
......
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