Add requirements.txt file for creating virtual env for running Prefactor

Former-commit-id: 5bb1d0ca Former-commit-id: 58b3f798

Add requirements.txt file for creating virtual env for running Prefactor
73ba8633 · Marcel Loose · Mattia Mancini · 17dbb36b · 73ba8633 · 73ba8633
Commit 73ba8633 authored 3 years ago by Marcel Loose Committed by Mattia Mancini 3 years ago
--- a/build_venv.sh
+++ b/build_venv.sh
+#!/bin/sh
+#
+# Build a virtual environment that can be used to run the Prefactor pipeline
+
+python3 -m venv venv
+. venv/bin/activate
+
+python3 -m pip install --upgrade pip
+python3 -m pip install --upgrade wheel
+
+python3 -m pip install -r requirements.txt
+
--- a/requirements.txt
+++ b/requirements.txt
+toil @ git+https://github.com/DataBiosphere/toil.git@27dae4cb1ea7e9df56c5e901ec786387c8111f5b#egg=toil[cwl]