Merge branch 'bash-exit-on-error' into 'master'

Let inline bash scripts exit on error

See merge request eosc/prefactor3-cwl!56

Former-commit-id: 4185da9d
Former-commit-id: 58ecb47e

lofar-cwl/steps/LoSoTo.Plot.cwl

@@ -23,7 +23,6 @@ requirements:
         entry: |
           #!/bin/bash
           set -e
-
           INPUT_H5PARM=$(inputs.input_h5parm.basename)
           DO_PLOTS=$(inputs.execute)
           if [ "$DO_PLOTS" = "true" ]; then

lofar-cwl/steps/LoSoTo.Smooth.cwl

@@ -29,7 +29,6 @@ requirements:
         entry: |
           #!/bin/bash
           set -e
-
           INPUT_H5PARM=$(inputs.input_h5parm.basename)
           DO_SMOOTH=$(inputs.execute)
           if [ "$DO_SMOOTH" = "true" ]; then

lofar-cwl/steps/ms_concat.cwl

@@ -62,6 +62,7 @@ requirements:
       - entryname: ms_concat.sh
         entry: |
           #!/bin/bash
+          set -e
           directories=\$(ls -d out_*)
           #echo \$directories
           mkdir -pv workdir

steps/aoflag.cwl

@@ -135,6 +135,7 @@ requirements:
       - entryname: aoflag.sh
         entry: |
           #!/bin/bash
+          set -e
           directories=\$(ls -d out*)
           echo \$directories
           mkdir -pv workdir

steps/bulk_rename.cwl

@@ -36,4 +36,4 @@ requirements:
             cp "\${FILE_LIST[\$i]}" "tmp/\${FILE_PREFIX}_\${i}\${FILE_SUFFIX}"
           done
         writable: false
-  - class: InlineJavascriptRequirement
+  - class: InlineJavascriptRequirement
\ No newline at end of file

steps/untar.cwl

@@ -23,6 +23,7 @@ requirements:
       - entryname: 'untar.sh' 
         entry: |
           #!/bin/bash
+          set -e
           mkdir out
           cd out
           tar -xvf $1