Singularity.lofar_hba_sksp_base

Bootstrap: docker
From: fedora:31

%environment
    export INSTALLDIR=/opt/lofar
    . $INSTALLDIR/init.sh

%post
	# General environment settings.
	export J=4
	export INSTALLDIR=/opt/lofar
	export PYTHON_VERSION=2.7
	
	# Settings relevant to the installed software.
	export ARMADILLO_VERSION=9.900.3
	export BLAS_VERSION=3.8.0
	export BOOST_DOT_VERSION=1.69.0
	export BOOST_VERSION=1_69_0
	export CFITSIO_VERSION=7.3.47
    export FFTW_VERSION=3.5.8
	export HDF5_VERSION=1.10.5
	export LAPACK_VERSION=3.8.0
	export OPENBLAS_VERSION=3.8.0
	export SUPERLU_VERSION=5.2.1
	export WCSLIB_VERSION=6.4
    export DEBIAN_FRONTEND=noninteractive

    #
    # System installs
	#
	dnf -y update
    dnf -y install dnf-plugins-core
	dnf -y install patch sudo yum-utils
	dnf -y install git svn wget vim nano
	dnf -y install automake autoconf cmake make
	dnf -y install gcc gcc-c++ gcc-gfortran
	dnf -y install arpack-devel python-devel python3-devel lapack-devel libpng-devel libxml2-devel readline-devel ncurses-devel f2py bzip2-devel libicu-devel python3-scipy python-setuptools gsl gsl-devel gdal gdal-devel libpqxx libpqxx-devel
	dnf -y install bison flex ncurses tar bzip2 which gettext
	dnf -y install cmake3
    dnf -y install hdf5
	dnf -y install hdf5-devel
    dnf -y install python
	dnf -y install python-pip python2-tkinter python3-tkinter
    dnf -y install libsigc++20-devel gtkmm30-devel
    dnf -y install python3-devel
    dnf -y install lua lua-devel
    dnf -y install https://download1.rpmfusion.org/free/fedora/rpmfusion-free-release-$(rpm -E %fedora).noarch.rpm https://download1.rpmfusion.org/nonfree/fedora/rpmfusion-nonfree-release-$(rpm -E %fedora).noarch.rpm
    dnf -y install pgplot
    dnf -y install python3-numpy-f2py
    dnf -y install qt5
    dnf -y install perf

    #
    # Install Boost
    #
    dnf -y install boost boost-devel boost-python2 boost-python2-devel boost-python3 boost-python3-devel

    #
    # Install FFTW
    #
    dnf -y install fftw-devel fftw-libs

	#
	# Install OpenBLAS
	#
	dnf -y install blas-devel

	#
	# Install SuperLU
	#
	dnf -y install SuperLU SuperLU-devel

	#
	# Install Armadillo
	#
	dnf -y install armadillo armadillo-devel

    # 
    # Setup environment variables used during build
    #
    export CC=`which gcc`
	export CXX=`which g++`
    export make=`which make`

	mkdir -p $INSTALLDIR
    export LD_LIBRARY_PATH=/usr/local/cuda/lib64:/opt/intel/mkl/lib/intel64:$LD_LIBRARY_PATH
    export CMAKE_PREFIX_PATH=/usr/local/cuda/lib64:/opt/intel/mkl/lib/intel64:$CMAKE_PREFIX_PATH
    export CPATH=/usr/local/cuda/include:/opt/intel/mkl/include:$CPATH
    # Use these flags instead for an architecture optimized build.
    #export CFLAGS="-march=skylake-avx512 -mtune=skylake-avx512"
    #export CXXFLAGS="-march=skylake-avx512 -mtune=skylake-avx512"
    # Disable AVX512 instructions and build a generic architecture.
    export CFLAGS="-mno-avx512f -mno-avx512pf -mno-avx512er -mno-avx512cd -mno-avx512vl -mno-avx512bw -mno-avx512dq -mno-avx512ifma -mno-avx512vbmi"
    export CXXFLAGS="-mno-avx512f -mno-avx512pf -mno-avx512er -mno-avx512cd -mno-avx512vl -mno-avx512bw -mno-avx512dq -mno-avx512ifma -mno-avx512vbmi"

    ###################
    # Source installs #
    ###################
	#
	# Install cfitsio
	#
    dnf -y install cfitsio cfitsio-devel

	#
	# Install wcslib
	#
    dnf -y install wcslib wcslib-devel 

    #   
    # Install Image Domain Gridder (IDG)
    #   
    mkdir -p $INSTALLDIR/idg && cd $INSTALLDIR/idg
    git clone https://gitlab.com/astron-idg/idg.git src 
    cd src && git checkout $IDG_VERSION && mkdir build && cd build
    cmake -DCMAKE_INSTALL_PREFIX=$INSTALLDIR/idg ..
    make -j $J
    make install
    rm -rf $INSTALLDIR/idg/src

	echo "Installation directory contents:"
	ls $INSTALLDIR

    #
    # Wrap up installation, remove unnecessary stuff.
    dnf -y autoremove
    dnf -y clean all

	#
	# init-lofar
	#
	echo export INSTALLDIR=$INSTALLDIR > $INSTALLDIR/init.sh
    echo export LD_LIBRARY_PATH=/opt/intel/mkl/lib/intel64/:\$LD_LIBRARY_PATH >> $INSTALLDIR/init.sh

    #
    # entrypoint
    #
%runscript
    echo source $INSTALLDIR/init.sh >> $HOME/.bashrc
    echo export PATH=/usr/local/cuda/bin:\$PATH >> $INSTALLDIR/init.sh
    echo export LD_LIBRARY_PATH=/usr/local/cuda/lib64:/opt/intel/mkl/lib/intel64/:\$LD_LIBRARY_PATH >> $INSTALLDIR/init.sh
    . $INSTALLDIR/init.sh

%help
    This Singularity image acts as a base for the LOFAR installation. It has Fedora 31 setup, with the required dependencies installed. These are:
    
    * Armadillo 9.900.3
    * Boost 1.69.0
    * CFITSIO 7.3.47
    * FFTW 3.5.8
    * HDF5 1.10.5
    * LAPACK 3.8.0
    * OpenBLAS 3.8.0
    * SuperLU 5.2.1
    * WCSLIB 6.4