SSB-47: Remove test for removed code

CAL/CalibrationCommon/test/CMakeLists.txt

@@ -21,7 +21,6 @@ include(LofarCTest)
 
 lofar_add_test(t_holography_ms_class)
 lofar_add_test(t_holography_beam_specification_class)
-lofar_add_test(t_holography_datatable_class)
 lofar_add_test(t_holography_dataset_class)
 lofar_add_test(t_holography_dataset_class2)
 lofar_add_test(t_holography_observation)

CAL/CalibrationCommon/test/t_holography_datatable_class.py

-import logging
-import unittest
-import numpy
-import tempfile
-import h5py
-
-from lofar.calibration.common.datacontainers.holography_datatable import LazyH5Table,\
-    HolographyDataTable
-
-logger = logging.getLogger('t_holography_datatable_class')
-
-
-def test_data_dict_string_indexes():
-    frequencies = [str(i) for i in numpy.linspace(0, 1000, 100, dtype=float)]
-    stations = ['CS001', 'CS002']
-    beams = [str(int(i)) for i in range(100)]
-
-    dset = numpy.random.rand(10)
-    data_dict = {}
-    for fr in frequencies:
-        for station in stations:
-            for beam in beams:
-                data_dict[(fr, station, beam)] = dset
-    return data_dict
-
-
-class TestLazyH5Table(unittest.TestCase):
-    def test_create_table(self):
-        test_data = test_data_dict_string_indexes()
-        test_uri = '/mytest_uri'
-        temp_file_name = 'tempFile.h5'
-        with tempfile.TemporaryDirectory() as temporary_dir:
-            full_path = temporary_dir + '/' + temp_file_name
-            logger.info('creating temp file %s', full_path)
-            h5file = h5py.File(full_path)
-            data_table = LazyH5Table(uri=test_uri, h5_file=h5file)
-
-            for key, value in test_data.items():
-
-                data_table[key] = value
-
-            h5file.close()
-
-            h5file = h5py.File(full_path)
-
-            for key, value in test_data.items():
-
-                data_uri = '/'.join(key)
-                self.assertIn(test_uri + '/' + data_uri, h5file)
-
-
-def test_data_dict_holography_index_types():
-    frequencies = [i for i in numpy.linspace(0, 1000, 100, dtype=float)]
-    stations = ['CS001', 'CS002']
-    beams = [int(i) for i in range(100)]
-
-    dset = numpy.random.rand(10)
-    data_dict = {}
-    for station in stations:
-        for fr in frequencies:
-            for beam in beams:
-                data_dict[(station, fr, beam)] = dset
-    return data_dict
-
-
-class TestHolographyDatasetClass(unittest.TestCase):
-
-    def test_create_read_dataset(self):
-        test_data = test_data_dict_holography_index_types()
-
-        test_uri = '/mytest_uri'
-        temp_file_name = 'tempFile.h5'
-        with tempfile.TemporaryDirectory() as temporary_dir:
-            full_path = temporary_dir + '/' + temp_file_name
-            logger.info('creating temp file %s', full_path)
-            h5file = h5py.File(full_path, 'w')
-            data_table = HolographyDataTable(uri=test_uri, h5_file=h5file)
-
-            for key, value in test_data.items():
-                data_table[key] = value
-
-            h5file.close()
-
-            h5file = h5py.File(full_path, 'r')
-            data_table = HolographyDataTable(uri=test_uri, h5_file=h5file)
-
-            stored_keys = data_table.keys()
-            stations = set(key[0] for key in stored_keys)
-            frequencies = set(key[1] for key in stored_keys)
-            beams = set(key[2] for key in stored_keys)
-
-            self.assertEqual(set(data_table.frequencies), frequencies)
-            self.assertEqual(set(data_table.reference_stations), stations)
-            self.assertEqual(set(data_table.beam_numbers), beams)
-
-            self.assertEqual(stored_keys.difference(test_data.keys()), set())
-
-            for key, value in data_table.iter_items():
-                self.assertIn(key, test_data)
-                station_name, frequency, beam = key
-                numpy.testing.assert_array_equal(data_table[station_name, frequency, beam], test_data[key])
-
-            for frequency in data_table.frequencies:
-                for reference_station in data_table.reference_stations:
-                    for beam in data_table.beam_numbers:
-                        self.assertIn((reference_station, frequency, beam), stored_keys)
-
-    def test_wrong_index_types(self):
-        test_uri = '/mytest_uri'
-        temp_file_name = 'tempFile.h5'
-        with tempfile.TemporaryDirectory() as temporary_dir:
-            full_path = temporary_dir + '/' + temp_file_name
-            logger.info('creating temp file %s', full_path)
-            h5file = h5py.File(full_path)
-            data_table = HolographyDataTable(uri=test_uri, h5_file=h5file)
-            with self.assertRaises(IndexError):
-                data_table['ref', 1, 1] = 1
-            with self.assertRaises(IndexError):
-                data_table['ref', 1., ""] = 1
-            with self.assertRaises(IndexError):
-                data_table[1 , 1., 1] = 1
-
-    def test_wrong_index_number(self):
-        test_uri = '/mytest_uri'
-        temp_file_name = 'tempFile.h5'
-        with tempfile.TemporaryDirectory() as temporary_dir:
-            full_path = temporary_dir + '/' + temp_file_name
-            logger.info('creating temp file %s', full_path)
-            h5file = h5py.File(full_path)
-            data_table = HolographyDataTable(uri=test_uri, h5_file=h5file)
-
-            with self.assertRaises(IndexError):
-                data_table[1 , 1.] = 1
-            with self.assertRaises(IndexError):
-                data_table[1 , 1., 1, 1] = 1
-
-    def test_error_getting_non_existing_data(self):
-        test_uri = '/mytest_uri'
-        temp_file_name = 'tempFile.h5'
-        with tempfile.TemporaryDirectory() as temporary_dir:
-            full_path = temporary_dir + '/' + temp_file_name
-            logger.info('creating temp file %s', full_path)
-            h5file = h5py.File(full_path)
-            data_table = HolographyDataTable(uri=test_uri, h5_file=h5file)
-
-            with self.assertRaises(KeyError):
-                _ = data_table['stat', 1., 1]
-
-
-if __name__ == '__main__':
-    logging.basicConfig(format='%(name)s : %(message)s', level=logging.DEBUG)
-    unittest.main()

CAL/CalibrationCommon/test/t_holography_datatable_class.run

-#!/bin/bash
-
-# Copyright (C) 2018    ASTRON (Netherlands Institute for Radio Astronomy)
-# P.O. Box 2, 7990 AA Dwingeloo, The Netherlands
-#
-# This file is part of the LOFAR software suite.
-# The LOFAR software suite is free software: you can redistribute it and/or
-# modify it under the terms of the GNU General Public License as published
-# by the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# The LOFAR software suite is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.    See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License along
-# with the LOFAR software suite. If not, see <http://www.gnu.org/licenses/>.
-
-# Run the unit test
-source python-coverage.sh
-python_coverage_test "*holography_datatable*" t_holography_datatable_class.py
\ No newline at end of file

CAL/CalibrationCommon/test/t_holography_datatable_class.sh

-#!/bin/sh
-
-# Copyright (C) 2018    ASTRON (Netherlands Institute for Radio Astronomy)
-# P.O. Box 2, 7990 AA Dwingeloo, The Netherlands
-#
-# This file is part of the LOFAR software suite.
-# The LOFAR software suite is free software: you can redistribute it and/or
-# modify it under the terms of the GNU General Public License as published
-# by the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# The LOFAR software suite is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.    See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License along
-# with the LOFAR software suite. If not, see <http://www.gnu.org/licenses/>.
-
-./runctest.sh t_holography_datatable_class
\ No newline at end of file