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41 results

CalSessionTransactors.cc

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    prefactor_target.cwl 10.51 KiB
    class: Workflow
    cwlVersion: v1.1
    id: prefactor_target
    label: prefactor_target
    $namespaces:
      sbg: 'https://www.sevenbridges.com/'
    inputs:
      - id: msin
        type: 'Directory[]'
        'sbg:x': -1000
        'sbg:y': -1700
      - id: cal_solutions
        type: File
        'sbg:x': -1000
        'sbg:y': -1600
      - id: refant
        type: string?
        default: CS00.*
        'sbg:x': -1000
        'sbg:y': -1500
      - id: flag_baselines
        type: 'string[]?'
        default: []
        'sbg:x': -1000
        'sbg:y': -1400
      - id: process_baselines_target
        type: string?
        default: '[CR]S*&'
        'sbg:x': -1000
        'sbg:y': -1300
      - id: filter_baselines
        type: string?
        default: '[CR]S*&'
        'sbg:x': -1000
        'sbg:y': -1200
      - id: do_smooth
        type: boolean?
        default: false
        'sbg:x': -1000
        'sbg:y': -1100
      - id: rfistrategy
        type: string?
        default: HBAdefault.rfis
        'sbg:x': -1000
        'sbg:y': -1000
      - id: min_unflagged_fraction
        type: float?
        default: 0.5
        'sbg:x': -1000
        'sbg:y': -900
      - id: compression_bitrate
        type: int?
        default: 16
        'sbg:x': -1000
        'sbg:y': -800
      - id: raw_data
        type: boolean?
        default: false
        'sbg:x': -1000
        'sbg:y': -700
      - id: propagatesolutions
        type: boolean?
        default: true
        'sbg:x': -1000
        'sbg:y': -600
      - id: demix_sources
        type: 'string[]?'
        default:
          - CasA
          - CygA
        'sbg:x': -1000
        'sbg:y': -500
      - id: demix_target
        type: string?
        default: ''
        'sbg:x': -1000
        'sbg:y': -400
      - id: demix_freqstep
        type: int?
        default: 16
        'sbg:x': -1000
        'sbg:y': -300
      - id: demix_timestep
        type: int?
        default: 10
        'sbg:x': -1000
        'sbg:y': -200
      - id: demix
        type: boolean?
        default: false
        'sbg:x': -1000
        'sbg:y': -100
      - id: apply_tec
        type: boolean?
        default: false
        'sbg:x': -1000
        'sbg:y': 0
      - id: apply_clock
        type: boolean?
        default: true
        'sbg:x': -1000
        'sbg:y': 100
      - id: apply_phase
        type: boolean?
        default: false
        'sbg:x': -1000
        'sbg:y': 200
      - id: apply_RM
        type: boolean?
        default: true
        'sbg:x': -1000
        'sbg:y': 300
      - id: apply_beam
        type: boolean?
        default: true
        'sbg:x': -1000
        'sbg:y': 400
      - id: clipATeam
        type: boolean?
        default: true
        'sbg:x': -1000
        'sbg:y': 500
      - id: gsmcal_step
        type: string?
        default: phase
        'sbg:x': -1000
        'sbg:y': 600
      - id: updateweights
        type: boolean?
        default: true
        'sbg:x': -1000
        'sbg:y': 700
      - id: max_dppp_threads
        type: int?
        default: 10
        'sbg:x': -1000
        'sbg:y': 800
      - id: memoryperc
        type: int?
        default: 20
        'sbg:x': -1000
        'sbg:y': 900
      - id: min_length
        type: int?
        default: 5
        'sbg:x': -1000
        'sbg:y': 1000
      - id: overhead
        type: float?
        default: 0.7
        'sbg:x': -1000
        'sbg:y': 1100
      - id: min_separation
        type: int?
        default: 30
        'sbg:x': -1000
        'sbg:y': 1200
      - id: A-Team_skymodel
        type: File?
        'sbg:x': -1000
        'sbg:y': 1300
      - id: target_skymodel
        type: File?
        'sbg:x': -1000
        'sbg:y': 1400
      - id: use_target
        type: boolean?
        default: true
        'sbg:x': -1000
        'sbg:y': 1500
      - id: skymodel_source
        type: string?
        default: TGSS
        'sbg:x': -1000
        'sbg:y': 1600
      - id: avg_timeresolution
        type: int?
        default: 4
        'sbg:x': -1000
        'sbg:y': 1700
      - id: avg_freqresolution
        type: string?
        default: 48.82kHz
        'sbg:x': -1000
        'sbg:y': 1800
      - id: avg_timeresolution_concat
        type: int?
        default: 8
        'sbg:x': -1000
        'sbg:y': 1900
      - id: avg_freqresolution_concat
        type: string?
        default: 97.64kHz
        'sbg:x': -1000
        'sbg:y': 2000
      - id: num_SBs_per_group
        type: int?
        default: 10
        'sbg:x': -1000
        'sbg:y': 2100
      - id: reference_stationSB
        type: int?
        default: null
        'sbg:x': -1000
        'sbg:y': 2200
      - id: ionex_server
        type: string?
        default: 'ftp://ftp.aiub.unibe.ch/CODE/'
        'sbg:x': -1000
        'sbg:y': 2300
      - id: ionex_prefix
        type: string?
        default: CODG
        'sbg:x': -1000
        'sbg:y': 2400
      - id: proxy_server
        type: string?
        default: null
        'sbg:x': -1000
        'sbg:y': 2500
      - id: proxy_port
        type: int?
        default: null
        'sbg:x': -1000
        'sbg:y': 2600
      - id: proxy_type
        type: string?
        default: null
        'sbg:x': -1000
        'sbg:y': 2700
      - id: proxy_user
        type: string?
        default: null
        'sbg:x': -1000
        'sbg:y': 2800
      - id: proxy_pass
        type: string?
        default: null
        'sbg:x': -1000
        'sbg:y': 2900
      - id: clip_sources
        type: 'string[]?'
        default:
          - VirA_4_patch
          - CygAGG
          - CasA_4_patch
          - TauAGG
        'sbg:x': -1000
        'sbg:y': 3000
      - id: ncores
        type: int?
        default: 16
        'sbg:x': -1000
        'sbg:y': 3100
    outputs:
      - id: inspection
        outputSource:
          - prep/inspection
          - gsmcal/inspection
          - finalize/inspection
        type: 'File[]'
        linkMerge: merge_flattened
        'sbg:x': 2000
        'sbg:y': -600
      - id: solutions
        outputSource:
          - finalize/solutions
        type: File
        'sbg:x': 2000
        'sbg:y': -500
      - id: msout
        outputSource:
          - finalize/msout
        type: 'Directory[]'
        'sbg:x': 2000
        'sbg:y': 0
      - id: logfiles
        outputSource:
          - prep/logfiles
          - gsmcal/logfiles
          - finalize/logfiles
        type: 'File[]'
        linkMerge: merge_flattened
        'sbg:x': 2000
        'sbg:y': 600
      - id: summary_file
        outputSource:
          - finalize/summary_file
        type: File
        'sbg:x': 2000
        'sbg:y': 300
    steps:
      - id: prep
        in:
          - id: msin
            source:
              - msin
          - id: cal_solutions
            source: cal_solutions
          - id: flag_baselines
            source:
              - flag_baselines
          - id: process_baselines_target
            source: process_baselines_target
          - id: filter_baselines
            source: filter_baselines
          - id: raw_data
            source: raw_data
          - id: demix_sources
            source:
              - demix_sources
          - id: demix_target
            source: demix_target
          - id: demix_freqstep
            source: demix_freqstep
          - id: demix_timestep
            source: demix_timestep
          - id: demix
            source: demix
          - id: apply_tec
            source: apply_tec
          - id: apply_clock
            source: apply_clock
          - id: apply_phase
            source: apply_phase
          - id: apply_RM
            source: apply_RM
          - id: apply_beam
            source: apply_beam
          - id: clipATeam
            source: clipATeam
          - id: updateweights
            source: updateweights
          - id: max_dppp_threads
            source: max_dppp_threads
          - id: memoryperc
            source: memoryperc
          - id: min_separation
            source: min_separation
          - id: A-Team_skymodel
            source: A-Team_skymodel
          - id: avg_timeresolution
            source: avg_timeresolution
          - id: avg_freqresolution
            source: avg_freqresolution
          - id: ionex_server
            source: ionex_server
          - id: ionex_prefix
            source: ionex_prefix
          - id: proxy_server
            source: proxy_server
          - id: proxy_port
            source: proxy_port
          - id: proxy_type
            source: proxy_type
          - id: proxy_user
            source: proxy_user
          - id: proxy_pass
            source: proxy_pass
          - id: clip_sources
            source: clip_sources
        out:
          - id: compare_stations_filter
          - id: outh5parm
          - id: inspection
          - id: msout
          - id: check_Ateam_separation.json
          - id: prep_flags_join_out
          - id: initial_flags_join_out
          - id: logfiles
        run: ./prefactor_target/prep.cwl
        label: prep
        'sbg:x': 0
        'sbg:y': 0
      - id: gsmcal
        in:
          - id: msin
            source:
              - prep/msout
          - id: filter_baselines
            source: process_baselines_target
          - id: num_SBs_per_group
            source: num_SBs_per_group
          - id: reference_stationSB
            source: reference_stationSB
          - id: use_target
            source: use_target
          - id: target_skymodel
            source: target_skymodel
          - id: skymodel_source
            source: skymodel_source
          - id: do_smooth
            source: do_smooth
          - id: propagatesolutions
            source: propagatesolutions
          - id: avg_timeresolution_concat
            source: avg_timeresolution_concat
          - id: avg_freqresolution_concat
            source: avg_freqresolution_concat
          - id: min_unflagged_fraction
            source: min_unflagged_fraction
          - id: refant
            source: refant
          - id: min_length
            source: min_length
          - id: overhead
            source: overhead
        out:
          - id: msout
          - id: outh5parm
          - id: bad_antennas
          - id: outh5parm_logfile
          - id: Ateam_flags_join_out
          - id: inspection
          - id: logfiles
          - id: removed_bands
          - id: total_bandwidth
          - id: out_refant
        run: ./prefactor_target/gsmcal.cwl
        label: gsmcal
        'sbg:x': 900
        'sbg:y': 0
      - id: finalize
        in:
          - id: msin
            source:
              - gsmcal/msout
          - id: input_h5parm
            source: gsmcal/outh5parm
          - id: inh5parm_logfile
            source: gsmcal/outh5parm_logfile
          - id: gsmcal_step
            source: gsmcal_step
          - id: process_baselines_target
            source: process_baselines_target
          - id: bad_antennas
            source: gsmcal/bad_antennas
          - id: insolutions
            source: prep/outh5parm
          - id: compression_bitrate
            source: compression_bitrate
          - id: skymodel_source
            source: skymodel_source
          - id: total_bandwidth
            source: gsmcal/total_bandwidth
          - id: check_Ateam_separation.json
            source: prep/check_Ateam_separation.json
          - id: filter_baselines
            source: filter_baselines
          - id: compare_stations_filter
            source: prep/compare_stations_filter
          - id: flags
            linkMerge: merge_flattened
            source:
              - prep/initial_flags_join_out
              - prep/prep_flags_join_out
              - gsmcal/Ateam_flags_join_out
          - id: clip_sources
            source: clip_sources
          - id: demix
            source: demix
          - id: demix_sources
            source: demix_sources
          - id: ncores
            source: ncores
          - id: removed_bands
            source: gsmcal/removed_bands
          - id: min_unflagged_fraction
            source: min_unflagged_fraction
          - id: refant
            source: gsmcal/out_refant
        out:
          - id: msout
          - id: solutions
          - id: logfiles
          - id: inspection
          - id: summary_file
        run: ./prefactor_target/finalize.cwl
        label: finalize
        'sbg:x': 1200
        'sbg:y': 0
    requirements:
      - class: SubworkflowFeatureRequirement
      - class: ScatterFeatureRequirement
      - class: MultipleInputFeatureRequirement