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INSTALL 6.12 KiB
LOFAR (LOw Frequency ARray) Software Repository - INSTALL
=========================================================
Installation instructions for LOFAR software.
Supported Systems
-----------------
- Linux (most in use at ASTRON are Ubuntu, CentOS, and SUSE Linux Enterprise)
- Mac OS X (reasonably recent should work, also with LLVM/Clang)
- any See the next section on Docker
Install using a Docker image / script
-------------------------------------
For prepared Docker images, see:
http://www.lofar.org/wiki/doku.php?id=public:docker
To create a Docker image with Ubuntu or CentOS and LOFAR Offline processing tools, see:
https://github.com/lofar-astron/lofar-deploy
For a(nother) Docker image, see the next section.
Install from Ubuntu Packages (or a Docker image / script)
---------------------------------------------------------
To install LOFAR Offline processing tools (and many more radio astro packages)
the easy way for Ubuntu LTS 16.04, see:
KERN: The Radio Astronomy Software Suite
http://kernsuite.info/
Dependencies for Manual Build from Source
-----------------------------------------
Please first try to install as many dependencies as possible using your OS
package manager. For almost all cases, you also need the development packages
('pkgname-dev' for Debian/Ubuntu, or 'pkgname-devel' for CentOS/Fedora).
For Debian/Ubuntu (likely incomplete list, but goes a long way):
apt-get install subversion cmake make g++ gfortran python-dev python-numpy
apt-get install libboost-dev libblitz0-dev libfftw3-dev libcfitsio3-dev libxml2-dev liblog4cplus-dev
apt-get install libpng12-dev # or latest version; for AOFlagger
apt-get install libreadline-dev libpqxx-dev doxygen python-coverage # optional
apt-get install libxml++2.6-dev # or newer
apt-get install libarmadillo-dev # optional, for DPPP_DDECal
apt-get install libunittest++-dev # optional, for tests that use UnitTest++
apt-get install python-xmlrunner # for some CEP/Pipeline/ tests
apt-get install python-pygresql python-psycopg2 python-mysql.connector # python mysql and postgresql interfaces
apt-get install python-mock python-django # for some SAS/ tests
apt-get install postgresql # optional, for some SAS/OTDB_Services/ tests
apt-get install libhdf5-dev # optional, required by casacore-dev from the KERN-2 suite.
For CentOS/Fedora (likely incomplete list, but goes a long way):
yum install subversion cmake make gcc python-devel numpy
yum install boost-devel fftw-devel cfitsio-devel libxml2-devel libpng-devel
yum install readline-devel libpqxx-devel doxygen python-coverage # optional
yum install libxml++-devel yum install armadillo-devel # optional, for DPPP_DDECal
yum install PyGreSQL python-psycopg2 mysql-connector-python # python mysql and postgresql interfaces
yum install python2-mock python-django # for some SAS/ tests
yum install postgresql # optional, for some SAS/OTDB_Services/ tests
RPMs for these 3 known to work on CentOS 7 can be found at https://support.astron.nl/lofar_issuetracker/issues/8161
- blitz, blitz-devel: available on some distros, but not on e.g. CentOS 7.
If required for your build, but not in your repo, take the two RPMs from CentOS 6 (or build from source).
- log4cplus: idem as blitz (LOFAR log4cxx support is dodgy).
- unittest++, unitest++-devel (optional): idem, but can take two RPMs from Fedora 22 (or build from source).
- python-xmlrunner: pip install xmlrunner # possibly with: --target=/your/path/libdir/pythonversion/site-packages
NOTE (any OS): For manual builds, the most prominent dependencies you may need to install are:
casacore: https://github.com/casacore/casacore
python-casacore ('pyrap'): https://github.com/casacore/python-casacore
IERS/measures tables: ftp://ftp.astron.nl/outgoing/Measures/WSRT_Measures.ztar (auto-updated weekly),
also see https://github.com/casacore/casacore-data-update
casarest: https://github.com/casacore/casarest
AOFlagger: https://sourceforge.net/projects/aoflagger/
which may need: Debian/Ubuntu: libgsl-dev libgtkmm-[2.4|3.0]-dev libsigc++-2.0-dev
CentOS/Fedora: gsl-devel gtkmm[24|30]-devel libsigc++20-devel
PyBDSF (blob detector & source finder): https://github.com/lofar-astron/PyBDSF
python-monetdb (if using GSM inside the LOFAR network): pip install python-monetdb # possibly with: --target=/your/path/libdir/pythonversion/site-packages
Instructions for Manual Build from Source
-----------------------------------------
- SVN checkout build and configuration scripts of a tagged release x.y.z (or the
trunk) from https://svn.astron.nl/LOFAR/ into e.g. $HOME/src/LOFAR-x.y.z/
LOFAR_RELEASE=LOFAR-Release-x.y.z # set to used release version
svn checkout --depth=files "https://svn.astron.nl/LOFAR/tags/$LOFAR_RELEASE" "$HOME/src/$LOFAR_RELEASE"
svn update --depth=infinity "$HOME/src/$LOFAR_RELEASE/CMake"
- Auto-checkout and install the usual offline data reduction (imaging) packages
into e.g. $HOME/local/$LOFAR_RELEASE/
(Only ends succesfully once CMake can find all required dependencies.)
mkdir -p $HOME/build/$LOFAR_RELEASE/gnu_opt # last directory must be {gnu|clang}[cxx11]_{debug|opt}
cd $HOME/build/$LOFAR_RELEASE/gnu_opt
cmake -DCMAKE_INSTALL_PREFIX="$HOME/local/$LOFAR_RELEASE" -DBUILD_PACKAGES="DP3 Calibration Imager PyBDSM" -DUSE_OPENMP=ON "$HOME/src/$LOFAR_RELEASE"
- Build and install:
make -j 4
make -j 4 install # with sufficient privileges
- Optionally, run the regression tests:
ctest -j 4 --timeout 60
All tests should pass, however, a few packages (not selected above) require
GPU hardware or a database to pass all tests.
- You may want to add the installation path bin/ to your PATH by sourcing the lofarinit script:
source "$HOME/local/$LOFAR_RELEASE/lofarinit.sh" # for Bourne-like shells, or
source "$HOME/local/$LOFAR_RELEASE/lofarinit.csh" # for C-like shells