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feedback_handling.py
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Jorrit Schaap authoredJorrit Schaap authored
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concatenate_files.cwl 889 B
class: CommandLineTool
cwlVersion: v1.1
$namespaces:
sbg: 'https://www.sevenbridges.com/'
id: concatfiles
baseCommand:
- bash
- bulk_rename.sh
inputs:
- id: file_list
type: 'File[]'
inputBinding:
position: 0
- id: file_prefix
type: string
- id: file_suffix
type: string?
default: log
outputs:
- id: output
type: File
outputBinding:
glob: "$(inputs.file_prefix).$(inputs.file_suffix)"
label: concatfiles
requirements:
- class: InitialWorkDirRequirement
listing:
- entryname: bulk_rename.sh
entry: |
#!/bin/bash
set -e
FILE_LIST=("\${@}")
FILE_PREFIX=$(inputs.file_prefix)
FILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)
cat "\${FILE_LIST[@]}" > $FILE_PREFIX.$FILE_SUFFIX
writable: false
- class: InlineJavascriptRequirement