adjusted cwl workflow to treat *_ldv_psrfits_requantisation.log files the same...

adjusted cwl workflow to treat *_ldv_psrfits_requantisation.log files the same way as *rfifind.log files

steps/requantize.cwl

@@ -39,9 +39,10 @@ outputs:
     - '*/*/SAP*/BEAM*/*.png'
     - '*/*.png'
     - '*.png'
-    - rawvoltages/SAP*/BEAM*/*.png
+    - 'rawvoltages/SAP*/BEAM*/*.png'
     - '*stokes/SAP*/BEAM*/*.png'
     - '*.rfifind.log'
+    - '*stokes/SAP*/BEAM*/*_ldv_psrfits_requantisation.log'
 - id: file_content
   doc: file_content
   type: File
@@ -51,12 +52,6 @@ outputs:
   type: File
   outputBinding:
     glob: '*-ldv-summary.log'
-- id: summary_psrfits_file
-  doc: summary_psrfits_file
-  type: File?
-  outputBinding:
-    glob:
-    - '*stokes/SAP*/BEAM*/*_ldv_psrfits_requantisation.log'
 
 baseCommand:
 - psrfits_requantisation

workflow/download_and_run_psrfits_requantisation.cwl

@@ -22,9 +22,6 @@ outputs:
 - id: summary_file
   type: File[]
   outputSource: requantise/summary_file
-- id: summary_psrfits_file
-  type: File[]?
-  outputSource: requantise/summary_psrfits_file
 - id: ingest
   type: Any
   outputSource: requantise/ingest
@@ -49,7 +46,6 @@ steps:
   run: psrfits_requantisation.cwl
   out:
   - id: summary_file
-  - id: summary_psrfits_file
   - id: summary
   - id: tar_archive
   - id: ingest
@@ -63,21 +59,8 @@ steps:
   run: ../steps/join_contents.cwl
   out:
   - id: summary_file
-- id: join_contents_psrfits
-  in:
-  - id: summary_files
-    source: requantise/summary_psrfits_file
-    pickValue: all_non_null
-  - id: metadata
-    source: requantise/summary
-  run: ../steps/join_contents.cwl
-  when: $(inputs.summary_files.length > 0)
-  out:
-  - id: summary_file
 - id: format_quality
   in:
-  - id: summary_psrfits_file
-    source: join_contents_psrfits/summary_file
   - id: summary_file
     source: join_contents/summary_file
   - id: plots

workflow/psrfits_requantisation.cwl

@@ -22,9 +22,6 @@ outputs:
 - id: summary_file
   type: File
   outputSource: requantise/summary_file
-- id: summary_psrfits_file
-  type: File?
-  outputSource: requantise/summary_psrfits_file
 - id: plots
   type: File[]
   outputSource: requantise/plots
@@ -42,7 +39,6 @@ steps:
   - id: file_content
   - id: summary
   - id: summary_file
-  - id: summary_psrfits_file
   - id: bf_archive
   - id: plots