Dockerfile

Dockerfile

+FROM ubuntu:20.04
+
+RUN export DEBIAN_FRONTEND=noninteractive && apt-get update && \
+    apt-get install -y \
+    vim \
+    git \
+    cmake \
+    build-essential \
+    g++ \
+    pkg-config \
+    casacore-data casacore-dev \
+    libblas-dev liblapack-dev \
+    libpython3-dev \
+    libboost-date-time-dev libboost-test-dev \
+    libboost-program-options-dev libboost-system-dev libboost-filesystem-dev \
+    libcfitsio-dev \
+    libfftw3-dev \
+    libgtkmm-3.0-dev \
+    libgsl-dev \
+    libhdf5-dev \
+    liblua5.3-dev \
+    libopenmpi-dev \
+    libpng-dev \
+    pkg-config \
+    python3 \
+    python3-dev python3-numpy \
+    python3-sphinx \
+    python3-pip \
+    wget
+
+# EveryBeam
+RUN \
+  mkdir /software && \
+  cd /software && \
+  git clone https://git.astron.nl/RD/EveryBeam.git && \
+  mkdir /software/EveryBeam/build && \
+  cd /software/EveryBeam/build && \
+  cmake ../ && \
+  make install -j`nproc --all`
+
+# Dysco
+RUN \
+  cd /software && \
+  git clone https://github.com/aroffringa/dysco.git && \
+  mkdir /software/dysco/build && \
+  cd /software/dysco/build && \
+  cmake ../ && \
+  make install -j`nproc --all`
+
+# IDG
+RUN \
+  cd /software && \
+  git clone https://git.astron.nl/RD/idg.git && \
+  mkdir /software/idg/build && \
+  cd /software/idg/build && \
+  cmake ../ && \
+  make install -j`nproc --all`
+
+# WSClean
+RUN \
+  cd /software && \
+  git clone https://gitlab.com/aroffringa/wsclean.git && \
+  mkdir /software/wsclean/build && \
+  cd /software/wsclean/build && \
+  cmake ../ && \
+  make install -j`nproc --all` && \
+  wsclean --version
+
+# AOFlagger
+RUN \
+  cd /software && \
+  git clone https://gitlab.com/aroffringa/aoflagger.git && \
+  mkdir /software/aoflagger/build && \
+  cd /software/aoflagger/build && \
+  cmake ../ && \
+  make install -j`nproc --all` && \
+  aoflagger --version
+
+# DP3
+RUN \
+  cd /software && git clone https://git.astron.nl/RD/DP3.git && \
+  mkdir /software/DP3/build && \
+  cd /software/DP3/build && \
+  cmake ../ && \
+  make install -j`nproc --all` && \
+  DP3 -v
+
+# Install WSRT Measures (extra casacore data, for integration tests)
+# Note: The file on the ftp site is updated daily. When warnings regarding leap
+# seconds appear, ignore them or regenerate the docker image.
+RUN \
+  wget -O /WSRT_Measures.ztar ftp://ftp.astron.nl/outgoing/Measures/WSRT_Measures.ztar && \
+  cd /var/lib/casacore/data && \
+  tar xfz /WSRT_Measures.ztar && \
+  rm /WSRT_Measures.ztar
+
+# PyBDSF
+RUN \
+  apt-get install -y gfortran libboost-python-dev libboost-numpy-dev python3-setuptools python3-ipython ipython3 && \
+  apt-get remove -y python3-numpy && \
+  python3 -m pip install astropy matplotlib numpy scipy && \
+  cd /software && \
+  git clone https://github.com/lofar-astron/PyBDSF.git && \
+  cd /software/PyBDSF && \
+  python3 -m pip install . && \
+  apt-get install -y casacore-data casacore-dev python3-numpy && \
+  cd
+
+########################################################################################
+# AO tools  
+RUN \
+    cd /software && \
+    git clone https://github.com/aroffringa/modeltools.git modeltools && \
+    cd modeltools && \
+    mkdir build && \
+    cd build && \
+    cmake ../ && \
+    make -j4 && \
+    cp bbs2model cluster editmodel render /usr/local/bin/
+    
+# Python stuff
+RUN python3 -m pip install h5py pandas pyyaml
+
+# Tom's stuff
+ADD makemask /software/makemask
+RUN cd /software/makemask && \
+    gcc makeMaskFits.c -o makeMaskFits -lcfitsio -lm && \
+    gcc makeNoiseMapFits.c -o makeNoiseMapFits -lcfitsio -lm && \
+    cp makeMaskFits makeNoiseMapFits /usr/local/bin/
+    
+# kvis
+RUN cd /software && \
+    apt-get install -y libxaw7 && \
+    wget ftp://ftp.atnf.csiro.au/pub/software/karma/karma-1.7.25-common.tar.bz2 && \
+    wget ftp://ftp.atnf.csiro.au/pub/software/karma/karma-1.7.25-amd64_Linux_libc6.3.tar.bz2 && \
+    tar -xvf karma-1.7.25-amd64_Linux_libc6.3.tar.bz2 && \
+    tar -xvf karma-1.7.25-common.tar.bz2 && \
+    mv karma-1.7.25 /usr/local/karma && \
+    ln -s /usr/local/karma/amd64_Linux_libc6.3/bin/./kvis /usr/local/bin/kvis && \
+    ln -s /usr/local/karma/amd64_Linux_libc6.3/bin/./kshell /usr/local/bin/kshell && \
+    ln -s /usr/local/karma/amd64_Linux_libc6.3/bin/./kpvslice /usr/local/bin/kpvslice
+
+ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/karma/amd64_Linux_libc6.3/lib/ 
+ENV KARMABASE="/usr/local/karma/amd64_Linux_libc6.3"
+
+
+# Imcal
+ADD imcal.py /opt/imcal.py
+ADD imcal.yml /opt/imcal_default.yml
+RUN ln -s /opt/apipeline/imcal.py /usr/local/bin/imcal.py
+    
+#Clean 
+RUN rm -rf /software/*
+
+
+
+
+    
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