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Integrate with ATDB execution framework

Marcel Loose requested to merge atdb_integration_test into master

Further integration into the ATDB execution framework. As requested by Mattia, two major changes were made:

  • Do not use separate (intermediate) JSON parset file that is converted to parset format using jq, but generate it directly in CWL using a bit of JavaScript helper code.
  • Do not generate Directory objects as outputs but tar-ball File objects for each of these directories.

Closes RAP-311

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