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Added AOflagged data as an output of the pipeline.

Matthijs van der Wild requested to merge fix_concatenation_output into master

The output data in the concatenation workflow only contains flagged data if the data is additionally corrected for direction-dependent effects. That is, the pipeline either captures the output of dp3_applycal (which contains the flagging information from AOflagging) or dp3_concat. If dp3_applycal has not been executed the flagging information is lost.

The change in this MR allows the pipeline to collect the output of AOflagging if it has been executed without subsequently running dp3_applycal.

Edited by Matthijs van der Wild

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