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class: CommandLineTool
cwlVersion: v1.2
id: aoflagging
label: aoflagging
baseCommand: DP3
inputs:
- id: msin
type: Directory
inputBinding:
position: 0
prefix: msin=
separate: false
shellQuote: false
doc: Input Measurement Set
- id: msin_datacolumn
type: string?
default: DATA
inputBinding:
position: 0
prefix: msin.datacolumn=
separate: false
shellQuote: true
doc: Input data Column
- id: memoryperc
type: int?
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inputBinding:
position: 0
prefix: aoflagger.memoryperc=
separate: false
shellQuote: false
doc: Indicates the percentage of pc memory to use
- id: keepstatistics
type: boolean?
default: true
inputBinding:
prefix: aoflagger.keepstatistics=True
doc: Indicates whether statistics should be written to file.
- id: strategy
type:
- File?
- string?
default: $PREFACTOR_DATA_ROOT/rfistrategies/lofar-default.lua
inputBinding:
position: 0
prefix: aoflagger.strategy=
separate: false
shellQuote: false
doc: specifies a customized strategy
arguments:
- steps=[aoflagger]
- aoflagger.type=aoflagger
- msout=.
outputs:
- id: msout
doc: Output Measurement Set
type: Directory
outputBinding:
glob: $(inputs.msin.basename)
- id: logfile
type: File[]
outputBinding:
glob: aoflag*.log
requirements:
- class: InitialWorkDirRequirement
listing:
- entry: $(inputs.msin)
writable: true
- class: ShellCommandRequirement
- class: ResourceRequirement
coresMin: 6
hints:
DockerRequirement:
dockerPull: vlbi-cwl
stdout: aoflag.log
stderr: aoflag_err.log