LINC calibration fails on applybeam step
Whilst it worked for a previous dataset, I seem to no longer be able to run the calibration pipeline through cwl/singularity. I have also tried a fresh install of these. It appears to be looking for certain files in a directory that doesn't exist at '/home/a/ah724/src/miniconda3/envs/lofar_pipeline/share/everybeam/
. In the singularity image, I can however see other that I expect to see in the software package, e.g.: DP3, losoto, but there I find no sign of everybeam.
The applycal_applybeam_err log shows:
HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 46912626698304:
#000: ../../../src/H5F.c line 509 in H5Fopen(): unable to open file
major: File accessibilty
minor: Unable to open file
#001: ../../../src/H5Fint.c line 1400 in H5F__open(): unable to open file
major: File accessibilty
minor: Unable to open file
#002: ../../../src/H5Fint.c line 1546 in H5F_open(): unable to open file: time = Thu May 18 18:08:32 2023
, name = '/home/a/ah724/src/miniconda3/envs/lofar_pipeline/share/everybeam/HamakerHBACoeff.h5', tent_flags = 0
major: File accessibilty
minor: Unable to open file
#003: ../../../src/H5FD.c line 734 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#004: ../../../src/H5FDsec2.c line 346 in H5FD_sec2_open(): unable to open file: name = '/home/a/ah724/src/miniconda3/envs/lofar_pipeline/share/everybeam/HamakerHBACoeff.h5', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0
major: File accessibilty
minor: Unable to open file
terminate called after throwing an instance of 'H5::FileIException'
Any ideas on troubleshooting this?
Thanks, Adam