Add calibration workflow

workflows/dowload_surl_and_create_input_file-json.cwl

@@ -10,18 +10,18 @@ inputs:
     'sbg:x': -329.7890625
     'sbg:y': -35
 outputs:
-  - id: msin
+  - id: results
     outputSource:
-      - untar/uncompressed
-    type: 'Directory[]'
-    'sbg:x': 632
-    'sbg:y': -72
-  - id: workflow_configuration
+      - _h_b_a_calibrator/results
+    type: Directory
+    'sbg:x': 739.1641235351562
+    'sbg:y': -95.5
+  - id: logs
     outputSource:
-      - create_workflow_input/output
-    type: File
-    'sbg:x': 663
-    'sbg:y': 137
+      - _h_b_a_calibrator/logs
+    type: Directory
+    'sbg:x': 725.1641235351562
+    'sbg:y': 153.5
 steps:
   - id: read_surl_list
     in:
@@ -57,17 +57,6 @@ steps:
       - tar_file
     'sbg:x': 350
     'sbg:y': 8
-  - id: create_workflow_input
-    in:
-      - id: msin
-        source:
-          - untar/uncompressed
-    out:
-      - id: output
-    run: ../steps/create_workflow_input.cwl
-    label: create_workflow_input
-    'sbg:x': 475
-    'sbg:y': 135
   - id: stage
     in:
       - id: input
@@ -80,7 +69,20 @@ steps:
       - input
     'sbg:x': -8
     'sbg:y': -29
+  - id: _h_b_a_calibrator
+    in:
+      - id: msin
+        source:
+          - untar/uncompressed
+    out:
+      - id: logs
+      - id: results
+    run: ./HBA_calibrator.cwl
+    label: HBA_calibrator
+    'sbg:x': 563
+    'sbg:y': 17
 requirements:
+  - class: SubworkflowFeatureRequirement
   - class: ScatterFeatureRequirement
   - class: InlineJavascriptRequirement
   - class: StepInputExpressionRequirement