Merge branch 'relative-path-in-HBA-target-test' into 'master'

CI fixes

See merge request eosc/prefactor3-cwl!65

.gitlab-ci.yml

@@ -46,39 +46,34 @@ validate_scripts:
 
 blsmooth:
   stage: test_steps
-  allow_failure: true
   needs: ["download_data"]
   script:
     - cwltool --no-container steps/blsmooth.cwl test_jobs/blsmooth.json
 
 find_skymodel_cal:
   stage: test_steps
-  allow_failure: true
   needs: ["download_data"]
   script:
     - cwltool --no-container --preserve-environment PYTHONPATH steps/find_skymodel_cal.cwl test_jobs/find_skymodel_cal.json
 
 check_ateam_separation:
   stage: test_steps
-  allow_failure: true
   needs: ["download_data"]
   script:
-    - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH steps/check_ateam_separation.cwl test_jobs/check_ateam_separation.json
+    - cwltool --no-container --preserve-environment PATH --preserve-environment PYTHONPATH steps/check_ateam_separation.cwl test_jobs/check_ateam_separation.json
 
 run_hba_calibrator:
   stage: test_full
-  allow_failure: true
   needs: ["download_data"]
   script:
-    - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH --outdir results workflows/HBA_calibrator.cwl test_jobs/HBA_calibrator.json
+    - cwltool --no-container --preserve-environment PATH --preserve-environment PYTHONPATH --outdir results workflows/HBA_calibrator.cwl test_jobs/HBA_calibrator.json
     - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_calibrator
 
 run_hba_target:
   stage: test_full
-  allow_failure: true
   needs: ["download_data"]
   script:
-    - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH --outdir results workflows/HBA_target.cwl test_jobs/HBA_target.json
+    - cwltool --no-container --preserve-environment PATH --preserve-environment PYTHONPATH --outdir results workflows/HBA_target.cwl test_jobs/HBA_target.json
     - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_target
 
 build-doc:

test_jobs/HBA_target.json

@@ -85,7 +85,7 @@
     "ncores": 12,
     "cal_solutions": {
         "class": "File",
-        "path": "/builds/eosc/prefactor3-cwl/data/results_calibrator/cal_solutions.h5"
+        "path": "../data/results_calibrator/cal_solutions.h5"
     },
     "A-Team_skymodel": {
         "class": "File",