Add steps from master and disable target test

Former-commit-id: 77046334 [formerly 4bd8aea5]
Former-commit-id: 4b482cc3
Former-commit-id: 20e326a4

.gitlab-ci.yml

@@ -10,6 +10,7 @@ variables:
 stages:
   - download_data
   - validate_cwl_scripts
+  - test_steps
   - test_full
 
 before_script:
@@ -37,6 +38,27 @@ validate_scripts:
   script:
     - for file in `find . -name 'steps/*.cwl'`; do cwltool --validate $file; done
 
+blsmooth:
+  stage: test_steps
+  allow_failure: true
+  needs: ["download_data"]
+  script:
+    - cwltool --no-container steps/blsmooth.cwl test_jobs/blsmooth.json
+
+find_skymodel_cal:
+  stage: test_steps
+  allow_failure: true
+  needs: ["download_data"]
+  script:
+    - cwltool --no-container --preserve-environment PYTHONPATH steps/find_skymodel_cal.cwl test_jobs/find_skymodel_cal.json
+
+check_ateam_separation:
+  stage: test_steps
+  allow_failure: true
+  needs: ["download_data"]
+  script:
+    - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH steps/check_ateam_separation.cwl test_jobs/check_ateam_separation.json
+
 run_hba_full:
   stage: test_full
   allow_failure: true
@@ -44,6 +66,6 @@ run_hba_full:
   script:
     - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_calibrator.cwl test_jobs/HBA_calibrator.json
     - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_calibrator
-    - rm -rf results
-    - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_target.cwl test_jobs/HBA_target.json
-    - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_target
+#    - rm -rf results
+#    - cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/HBA_target.cwl test_jobs/HBA_target.json
+#    - test_jobs/check_workflow_results.py results /builds/eosc/prefactor3-cwl/data/results_target

test_jobs/blsmooth.json

 {
     "msin": {
             "class": "Directory",
-            "path": "../data/L570745_SB003_uv_first10.MS"
+            "path": "../data/L667520_SB000_uv.MS"
         },
     "do_smooth": false
 }

test_jobs/check_ateam_separation.json

 {
   "ms": {
     "class": "Directory",
-    "path": "../data/L570745_SB001_uv_first10.MS"
+    "path": "../data/L667520_SB000_uv.MS"
   }
 }

test_jobs/find_skymodel_cal.json

 {
     "msin": {
         "class": "Directory",
-        "path": "../data/L570745_SB000_uv_first10.MS"
+        "path": "../data/L667520_SB000_uv.MS"
     },
     "skymodels": {
         "class": "Directory",