Merge branch 'improve_check_workflow_script' into 'master'

Improve script that checks workflow results

See merge request eosc/prefactor3-cwl!40

test_jobs/check_workflow_results.py

@@ -22,6 +22,7 @@ def main(results_path, control_path):
     control_path : str
         Path to control results directory
     """
+    error = False
     # Check that all expected output files are present
     dcmp = dircmp(results_path, control_path)
     if len(dcmp.left_only) > 0 or len(dcmp.right_only) > 0:
@@ -31,7 +32,7 @@ def main(results_path, control_path):
         if len(dcmp.right_only) > 0:
             print('ERROR: The following files are present in the control but not in the '
                   'output: {}'.format(dcmp.right_only))
-        sys.exit(1)
+        error = True
 
     # Check that the calibration solutions match the control ones
     check_h5parm = os.path.join(results_path, 'cal_values', 'cal_solutions.h5')
@@ -44,10 +45,19 @@ def main(results_path, control_path):
             control_soltab = control_solset.getSoltab(check_soltab.name)
             if not np.allclose(check_soltab.val, control_soltab.val, rtol=1e-03,
                                atol=1e-03, equal_nan=True):
+                error = True
                 print('ERROR: Val array of soltab {} of solset {} does not match '
                       'the control'.format(check_soltab.name, check_solset.name))
-                sys.exit(1)
-
+                with open("check_soltab.{}.val".format(check_soltab.name), "w") as f:
+                    f.write(str(check_soltab.val))
+                with open("control_soltab.{}.val".format(control_soltab.name), "w") as f:
+                    f.write(str(control_soltab.val))
+            else:
+                print('INFO: Val array of soltab {} of solset {} matches '
+                      'the control'.format(check_soltab.name, check_solset.name))
+    control_h5.close()
+    check_h5.close()
+    sys.exit(error)
 
 if __name__ == '__main__':
     descriptiontext = "Checks the ouput of a workflow run.\n"