finish bandpass step

lofar-cwl/steps/H5ParmCollector.cwl

@@ -76,13 +76,14 @@ outputs:
     outputBinding:
       glob: $(inputs.outh5parmname)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.outh5parmname)-parm_collector_output.log
+      glob: '$(inputs.outh5parmname)-parm_collector_output*.log'
 label: H5parm_collector
 hints:
   - class: DockerRequirement
     dockerPull: 'lofareosc/prefactor:HBAcalibrator'
 stdout: $(inputs.outh5parmname)-parm_collector_output.log
+stderr: $(inputs.outh5parmname)-parm_collector_output_err.log
 requirements:
   - class: InlineJavascriptRequirement
\ No newline at end of file

lofar-cwl/steps/LoSoTo.Abs.cwl

@@ -25,12 +25,13 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
 hints:
   DockerRequirement:
-    dockerPull: lofareosc/lofar-pipeline-ci:latest
+    dockerPull: lofareosc/prefactor:HBAcalibrator
 
 inputs:
   - id: input_h5parm

lofar-cwl/steps/LoSoTo.Clip.cwl

@@ -26,12 +26,13 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
 hints:
   DockerRequirement:
-    dockerPull: lofareosc/lofar-pipeline-ci:latest
+    dockerPull: lofareosc/prefactor:HBAcalibrator
 
 inputs:
   - id: input_h5parm

lofar-cwl/steps/LoSoTo.Duplicate.cwl

@@ -25,6 +25,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -49,11 +50,12 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log
 $namespaces:
   lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl
 $schema:

lofar-cwl/steps/LoSoTo.Faraday.cwl

@@ -27,6 +27,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -61,11 +62,12 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log
 
 $schema:
   - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl

lofar-cwl/steps/LoSoTo.Flag.cwl

@@ -27,6 +27,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -102,10 +103,11 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log
 $schema:
   - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl

lofar-cwl/steps/LoSoTo.FlagStation.cwl

@@ -26,6 +26,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -101,10 +102,11 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log
 $schema:
   - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl

lofar-cwl/steps/LoSoTo.Flagextend.cwl

@@ -28,6 +28,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -68,10 +69,11 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log
 $schema:
   - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl

lofar-cwl/steps/LoSoTo.Interpolate.cwl

@@ -29,6 +29,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -79,10 +80,11 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: logfile
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log
 $schema:
   - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl

lofar-cwl/steps/LoSoTo.Lofarbeam.cwl

@@ -25,12 +25,13 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
 hints:
   DockerRequirement:
-    dockerPull: lofareosc/lofar-pipeline-ci:latest
+    dockerPull: lofareosc/prefactor:HBAcalibrator
 
 inputs:
   - id: input_h5parm

lofar-cwl/steps/LoSoTo.Norm.cwl

@@ -26,12 +26,13 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
 hints:
   DockerRequirement:
-    dockerPull: lofareosc/lofar-pipeline-ci:latest
+    dockerPull: lofareosc/prefactor:HBAcalibrator
 
 inputs:
   - id: input_h5parm

lofar-cwl/steps/LoSoTo.Plot.cwl

@@ -24,6 +24,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -130,11 +131,16 @@ outputs:
     outputBinding:
       glob: "$(inputs.prefix)*.png"
   - id: logfile
+    type: File[]
+    outputBinding:
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
+  - id: parset
     type: File
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: parset.config
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log      
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log    
 
 
 $namespaces:

lofar-cwl/steps/LoSoTo.Polalign.cwl

@@ -43,6 +43,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -89,8 +90,9 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log

lofar-cwl/steps/LoSoTo.Replicateonaxis.cwl

@@ -42,7 +42,7 @@ arguments:
 
 hints:
   DockerRequirement:
-    dockerPull: lofareosc/lofar-pipeline-ci:latest
+    dockerPull: lofareosc/prefactor:HBAcalibrator
 
 inputs:
   - id: input_h5parm

lofar-cwl/steps/LoSoTo.Reset.cwl

@@ -24,12 +24,13 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
 hints:
   DockerRequirement:
-    dockerPull: lofareosc/lofar-pipeline-ci:latest
+    dockerPull: lofareosc/prefactor:HBAcalibrator
 
 inputs:
   - id: input_h5parm

lofar-cwl/steps/LoSoTo.Residual.cwl

@@ -24,6 +24,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -53,11 +54,12 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log
 
 $namespaces:
   lofar: https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl

lofar-cwl/steps/LoSoTo.Reweight.cwl

@@ -27,6 +27,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
@@ -78,10 +79,11 @@ outputs:
     outputBinding:
       glob: $(inputs.input_h5parm.basename)
   - id: log
-    type: File
+    type: File[]
     outputBinding:
-      glob: $(inputs.input_h5parm.basename)-losoto.log
+      glob: '$(inputs.input_h5parm.basename)-losoto*.log'
 
 stdout: $(inputs.input_h5parm.basename)-losoto.log
+stderr: $(inputs.input_h5parm.basename)-losoto_err.log
 $schema:
   - https://git.astron.nl/eosc/ontologies/raw/master/schema/lofar.owl

lofar-cwl/steps/LoSoTo.Smooth.cwl

@@ -30,6 +30,7 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 

lofar-cwl/steps/LoSoTo.Splitleak.cwl

@@ -24,12 +24,13 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
 hints:
   DockerRequirement:
-    dockerPull: lofareosc/lofar-pipeline-ci:latest
+    dockerPull: lofareosc/prefactor:HBAcalibrator
 
 inputs:
   - id: input_h5parm

lofar-cwl/steps/LoSoTo.Structure.cwl

@@ -27,12 +27,13 @@ requirements:
 baseCommand: "losoto"
 
 arguments:
+  - '--verbose'
   - $(inputs.input_h5parm.basename)
   - parset.config
 
 hints:
   DockerRequirement:
-    dockerPull: lofareosc/lofar-pipeline-ci:latest
+    dockerPull: lofareosc/prefactor:HBAcalibrator
 
 inputs:
   - id: input_h5parm