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Commit 2f87cfee authored by alex's avatar alex
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Update .gitlab-ci.yml file

Former-commit-id: 9397748c
parent 389e12f1
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......@@ -60,23 +60,3 @@ pol_align:
stage: integration_test
script:
- cwltool --no-container subworkflow/pol_align.cwl test_jobs/pol_align.json
faraday_rotation:
stage: integration_test
script:
- cwltool --no-container --preserve-entire-environment subworkflow/faraday_rotation.cwl test_jobs/faraday_rotation.json
prefactor_calibrator:
stage: integration_test
script:
- cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/prefactor_calibrator.cwl test_jobs/integration_test_prefactor_calibrator.json
toil:
stage: integration_test
script:
- toil-cwl-runner --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH --jobStore jobstore --writeLogs logs --workDir workdir workflows/prefactor_calibrator.cwl test_jobs/integration_test_prefactor_calibrator.json
flag_average:
stage: integration_test
script:
- cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH test_workflow/flag_average.cwl test_jobs/flag_average.json
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