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ResearchAndDevelopment
LINC
Commits
2f87cfee
Commit
2f87cfee
authored
3 years ago
by
alex
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Update .gitlab-ci.yml file
Former-commit-id:
9397748c
parent
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2f87cfee
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@@ -60,23 +60,3 @@ pol_align:
stage
:
integration_test
script
:
-
cwltool --no-container subworkflow/pol_align.cwl test_jobs/pol_align.json
faraday_rotation
:
stage
:
integration_test
script
:
-
cwltool --no-container --preserve-entire-environment subworkflow/faraday_rotation.cwl test_jobs/faraday_rotation.json
prefactor_calibrator
:
stage
:
integration_test
script
:
-
cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH workflows/prefactor_calibrator.cwl test_jobs/integration_test_prefactor_calibrator.json
toil
:
stage
:
integration_test
script
:
-
toil-cwl-runner --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH --preserve-environment PYTHONPATH --jobStore jobstore --writeLogs logs --workDir workdir workflows/prefactor_calibrator.cwl test_jobs/integration_test_prefactor_calibrator.json
flag_average
:
stage
:
integration_test
script
:
-
cwltool --no-container --preserve-environment LD_LIBRARY_PATH --preserve-environment PATH test_workflow/flag_average.cwl test_jobs/flag_average.json
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