Add stman and dysco

Former-commit-id: 700712cc

Docker/Dockerfile

@@ -28,7 +28,8 @@ RUN export DEBIAN_FRONTEND=noninteractive && \
         libgtkmm-3.0-dev \
         git \
         wget \
-        libfftw3-dev
+        libfftw3-dev \
+        libgsl-dev
         
 RUN mkdir -p /src/
 WORKDIR /src/
@@ -48,6 +49,21 @@ RUN cd /src/dp3/  && \
     make -j2 && \
     make install -j2
 
+ADD ./STMAN /src/STMAN/src
+RUN cd /src/STMAN/ && \
+    mkdir build && \
+    cd build && \
+    cmake ../src -DCMAKE_INSTALL_PREFIX=/usr/local/ -DPORTABLE=True && \
+    make -j2 && \
+    make install -j2
+    
+ADD ./Dysco /src/Dysco/src
+RUN cd /src/Dysco/ && \
+    mkdir build && \
+    cd build && \
+    cmake ../src -DCMAKE_INSTALL_PREFIX=/usr/local/ -DPORTABLE=True && \
+    make -j2 && \
+    make install -j2
 
 #----------------------------------------------
 FROM kernsuite/base:4 as runner
@@ -97,6 +113,13 @@ LABEL LSMTool.version.tag=${LSMTool_TAG}
 ARG LoSoTo_TAG=master
 LABEL LoSoTo.version.tag=${LoSoTo_TAG}
 
+ARG STMAN_TAG=master
+LABEL STMAN.version.tag=${STMAN_TAG}
+
+ARG Dysco_TAG=master
+LABEL Dysco.version.tag=${Dysco_TAG}
+
+    
 RUN apt-get update && apt-get install -y nodejs python3-pip git wsclean
 RUN python3 -m pip install cwltool cwl-runner -e "git://github.com/darafferty/LSMTool.git@${LSMTool_TAG}#egg=LSMTool" \
                                    "toil[cwl]"==${TOIL_VERSION} \

Docker/build_docker.sh

@@ -5,8 +5,13 @@ git_clone_or_pull () {
     REPO=$1
     BRANCH=$2
     DIR=$3
-
-    git clone --depth 1 -b "${BRANCH}" "${REPO}" "${DIR}" 2> /dev/null || git -C "${DIR}" pull
+    if [ -d $DIR ] 
+    then
+     git -C "${DIR}" pull
+    else
+     mkdir -p ${DIR}
+     git clone --depth 1 -b "${BRANCH}" "${REPO}" "${DIR}"
+    fi
 }
 
 # SOFTWARE VERSIONS
@@ -15,7 +20,8 @@ IDG_TAG=0.6
 LSMTool_TAG=v1.4.2
 LoSoTo_TAG=f0398b
 TOIL_VERSION=3.20.0
-
+STMAN_TAG=master
+Dysco_TAG=v1.2
 
 # FETCHES THE IDG
 git_clone_or_pull https://gitlab.com/astron-idg/idg/ ${IDG_TAG} idg
@@ -23,6 +29,13 @@ git_clone_or_pull https://gitlab.com/astron-idg/idg/ ${IDG_TAG} idg
 # FETCHES DP3
 git_clone_or_pull https://github.com/lofar-astron/DP3 ${DP3_TAG} DP3
 
+# FETCHES STMAN
+git_clone_or_pull https://github.com/lofar-astron/LofarStMan ${STMAN_TAG} STMAN
+
+# FETCHES Dysco
+git_clone_or_pull https://github.com/aroffringa/dysco.git ${Dysco_TAG} Dysco
+
+
 # FETCHES THE SCRIPTS ONLY
 BRANCH=production
 REPO_URL=https://github.com/lofar-astron/prefactor
@@ -36,5 +49,7 @@ docker build ${DOCKER_PATH} --build-arg=IDG_TAG=${IDG_TAG}\
                             --build-arg=DP3_TAG=${DP3_TAG}\
                             --build-arg=LSMTool_TAG=${LSMTool_TAG}\
                             --build-arg=LoSoTo_TAG=${LoSoTo_TAG}\
+                            --build-arg=STMAN_TAG=${STMAN_TAG}\
+                            --build-arg=Dysco_TAG=${Dysco_TAG}\
                             --build-arg=TOIL_VERSION=${TOIL_VERSION}\
                             -t lofareosc/prefactor-ci