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H5ParmCollector.cwl 1.68 KiB
class: CommandLineTool
cwlVersion: v1.2
id: h5parm_collector
baseCommand:
- H5parm_collector.py
inputs:
- id: h5parmFiles
type:
- File[]
- File
inputBinding:
position: 0
doc: List of h5parm files
- default: sol000
id: insolset
type: string?
inputBinding:
position: 0
prefix: '--insolset'
doc: Input solset name
- default: sol000
id: outsolset
type: string?
inputBinding:
position: 0
prefix: '--outsolset'
doc: Output solset name
- id: insoltab
type: string?
inputBinding:
position: 0
prefix: '--insoltab'
doc: Output solset name
- default: output.h5
id: outh5parmname
type: string
doc: Output h5parm name
inputBinding:
position: 0
prefix: '--outh5parm'
- id: squeeze
type: boolean
default: false
inputBinding:
position: 0
prefix: '-q'
doc: removes all axes with the length of 1
- default: true
id: verbose
type: boolean
inputBinding:
position: 0
prefix: '-v'
doc: verbose output
- default: true
id: clobber
type: boolean
inputBinding:
position: 0
prefix: '-c'
doc: overwrite output
outputs:
- id: outh5parm
doc: Output h5parm
type: File
outputBinding:
glob: $(inputs.outh5parmname) - id: log
type: File[]
outputBinding:
glob: '$(inputs.outh5parmname)-parm_collector_output*.log'
label: H5parm_collector
hints:
- class: DockerRequirement
dockerPull: astronrd/linc
stdout: $(inputs.outh5parmname)-parm_collector_output.log
stderr: $(inputs.outh5parmname)-parm_collector_output_err.log
requirements:
- class: InlineJavascriptRequirement